Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0281 ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTCGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAAGTTGCAGCATCAATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGGCATATTTACCGCGGCCAACCAAAACGTCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTAATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCGAACAACAGTCCTTTCACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTCCTAGTGCTCTGCATGGAACTCTTACTAATGAAGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAACTCAACAGAACCAAGCTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGTTGCCACCCCAGCAGGAACTACAGCAGCAGCAACAATTGCAGCAGCAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCGCAACAGCCACAACGGCAACAACAGACCTCGCAATCTGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAGCAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTACATTATCGGAAGAAACGCAGTTTCAGCCACAAATAGAGCAACAACCTAGCCTTCTTCCGAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCACGTTCATCAGCAAAACCAGCAGATGCCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAGTACTAGTGGTGGCAGCTTCCAAACAGAAAAGCTTAACAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACCGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAACTGCGCAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGACTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGGACGTCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGTACATATACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGACGTCACTCGCTACAAAGGATATGAGGAGCTTAGGCATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTATGACGACAACTCGGCTGCATCATTCAATCGATAA 3333 45.42 MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVPSALHGTLTNEDPSKLLSFQAPVLSSPNLQFSKATQQNQAGQLPPTAWSQQQQLQQLLQVPASQQLQQQQLPPQQELQQQQQLQQQQLQQLPQQQQLQSQQPQRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTLSEETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQMPPLPLPNQQQFSTSGGSFQTEKLNSNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCAVSVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2590416 2601101 + ClG42_11g0028100.10 Clacu11g0281 261158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0281 1110 Gene3D - 124 227 IPR015300 -
Clacu11g0281 1110 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
Clacu11g0281 1110 ProSiteProfiles PB1 domain profile. 983 1076 IPR053793 -
Clacu11g0281 1110 Pfam AUX/IAA family 1029 1070 IPR033389 -
Clacu11g0281 1110 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Clacu11g0281 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1074 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu11g0281 1110 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Clacu11g0281 1110 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu11g0281 1110 Gene3D - 289 360 - -
Clacu11g0281 1110 MobiDBLite consensus disorder prediction 588 632 - -
Clacu11g0281 1110 Gene3D - 978 1072 - -
Clacu11g0281 1110 SUPERFAMILY CAD & PB1 domains 996 1061 - -
Clacu11g0281 1110 FunFam Auxin response factor 978 1072 - -
Clacu11g0281 1110 MobiDBLite consensus disorder prediction 1091 1110 - -
Clacu11g0281 1110 FunFam Auxin response factor 124 228 - -
Clacu11g0281 1110 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Clacu11g0281 1110 MobiDBLite consensus disorder prediction 702 736 - -
Clacu11g0281 1110 FunFam Auxin response factor 289 361 - -
Clacu11g0281 1110 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2567 Clacu-Chr1:35910482 Clacu11g0281 Clacu-Chr11:2590416 4.20E-169 dispersed
Clacu04g0954 Clacu-Chr4:23760534 Clacu11g0281 Clacu-Chr11:2590416 1.40E-76 dispersed
Clacu05g2015 Clacu-Chr5:29170340 Clacu11g0281 Clacu-Chr11:2590416 9.70E-174 dispersed
Clacu08g1243 Clacu-Chr8:22402708 Clacu11g0281 Clacu-Chr11:2590416 2.60E-62 dispersed
Clacu09g0945 Clacu-Chr9:8817222 Clacu11g0281 Clacu-Chr11:2590416 4.10E-17 dispersed
Clacu11g0281 Clacu-Chr11:2590416 Clacu11g1335 Clacu-Chr11:22767255 2.40E-245 dispersed
Clacu11g0281 Clacu-Chr11:2590416 Clacu03g0651 Clacu-Chr3:7105734 1.00E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48597 PF02309 AUX_IAA 1.70E-09 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0281 K14486 - csv:101210917 1742.63