Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0283 ATGGGCGCTTTTGGAATTGTGTTCTTCTTCCTCCTCCTTGTCGCTGTGTTTCCTTTGTCTTCTCCTTTGTCCGAGAACGAAGCTCTTTTGAAACTCAAACAATCCTTCACCCATTCCGAATCCTTGAATTCTTGGAACTCTGACTCTGTCCCTTGCTCCGCTCGATGGACCGGCATTATCTGTAATAGAGGCGTTATCACCGGCCTACATCTCTCCGGCCTCCAACTCTCCGGAAAAATCGACGTCGAAGCTCTTCTTCAGCTTCGTAGCCTTCGAACCATTAGCTTCGTTAACAACAAATTCTCCGGTCCGATTCCGGAATTCAACAAAATCGGAGTTCTAAAATCTCTTCTCTTAACCGGAAACCACTTCTCCGGCGCTATCCCAAACGATTTCTTCTCTTCCTTAACTTCTTTAAAAAAGGTTTGGCTCTCTTCAAACAATTTCTCCGGTAACATTCCAAATTCTCTAGCTCAACTCTCCCATTTAATCGAACTCCATCTCGAGAGCAACCAATTTTCAGGACCAATCCCAAATCTCAAATACGCTTCAATTATAACATCCCTTGATCTCTCCAACAACAAACTCGAAGGTCAAATTCCCGAAACCCTTTCAAAATTCGACGCAAAAGCATTCGCTGGAAATGAAGGCCTTTGCGGAAACCCACTCCCGAAATCTTGCGGCGAAAACGCTGGACGAATTTCTGAAGAGAAACCCCTTTCTTCATCTTCACCTCCTGGGGAATCGCAAAGCAATGTTTCGAAATTGGTTGTGGCTTCATTGATAGCCGTGGTTGTATTTCTAATGGTGTTTATATTTTTGAGTGCTTCAAAGCGCAGAGAAGATGAGTTCAGTGTATTGGGGAGAGAACAAATGGAGGAAGTTGTGGAGGTTCATGTACCGAGTTCCGGCGGCGGCCATGATAAGCAATCCAGCAGAAGAGGTGGGGATTCTAAGAGAGGATCGCAACAGGGGAAGGCGGGGATGAGCGATCTTGTGGTGGTTAATGAAGATAAAGGGACGTTTGGTTTGGCGGATTTGATGAAGGCTGCGGCGGAGGTTTTAGGGAATGGTGGGTTGGGTTCGGCTTACAAGGCGGTTATGTCCAATGGGTTGTCGGTGGTGGTGAAGAGAATGAGAGAGATGAATAAATTAGGGAAAGATGGGTTCGATGCGGAGATGAGACGACTTGGAAGATTGCGCCATCAGAATATATTAACGCCTTTGGCTTATCATTACAGGAGAGAGGAGAAATTGCTTGTGTCCGAGTACATTCCAAAGGGTAGCCTCTTGTATGTGTTGCATGGTGATCGTGGAGCCTGCCATGCAGATCTCAATTGGGCCACTCGGTTAAGGATCGTGCAGGGGATTGCAAGGGGATTGGGATTCCTCCATTCAGAATTTGCAACGTATGATCTGCCGCATGGGAATCTGAAATCCAGCAACGTTCTTCTAAGCGACAACTATGAGCCACTTTTGAGCGACTACGCATTCCATCCCCTTATCAATCCCAACAATGCAACTCAGGCAATGTTCGCTTACAAATCCCCTGAGTACGGGCAATACCAGGAAGTCTCTCCCAAGTCTGATGTTTATTGTCTTGGCATTATCATTCTCGAAATCATGACTAGTAAATTTCCTTCTCATTATCTTACAAATGGCAAGGGTGGTACTGATGTGGTGCAGTGGGTCTCATCTGCAATTTCTGAGAAGAGGGAGGCTGAACTCATTGACCCTGAGATTGCAAACGACACCGGTGCACTCAATCACATGGTCCAGCTTCTCATAATCGGCGCGGATTGCACCCACAATAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGAAGAGATATGA 1869 46.23 MGAFGIVFFFLLLVAVFPLSSPLSENEALLKLKQSFTHSESLNSWNSDSVPCSARWTGIICNRGVITGLHLSGLQLSGKIDVEALLQLRSLRTISFVNNKFSGPIPEFNKIGVLKSLLLTGNHFSGAIPNDFFSSLTSLKKVWLSSNNFSGNIPNSLAQLSHLIELHLESNQFSGPIPNLKYASIITSLDLSNNKLEGQIPETLSKFDAKAFAGNEGLCGNPLPKSCGENAGRISEEKPLSSSSPPGESQSNVSKLVVASLIAVVVFLMVFIFLSASKRREDEFSVLGREQMEEVVEVHVPSSGGGHDKQSSRRGGDSKRGSQQGKAGMSDLVVVNEDKGTFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNKLGKDGFDAEMRRLGRLRHQNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHADLNWATRLRIVQGIARGLGFLHSEFATYDLPHGNLKSSNVLLSDNYEPLLSDYAFHPLINPNNATQAMFAYKSPEYGQYQEVSPKSDVYCLGIIILEIMTSKFPSHYLTNGKGGTDVVQWVSSAISEKREAELIDPEIANDTGALNHMVQLLIIGADCTHNNPQQRPEMREAIRRIEEI 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2613618 2615946 + ClG42_11g0028300.10 Clacu11g0283 261160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0283 622 FunFam Nuclear pore complex protein NUP107 23 179 - -
Clacu11g0283 622 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Clacu11g0283 622 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Clacu11g0283 622 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Clacu11g0283 622 SUPERFAMILY Protein kinase-like (PK-like) 353 618 IPR011009 -
Clacu11g0283 622 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515(InterPro)
Clacu11g0283 622 Pfam Protein kinase domain 353 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0283 622 MobiDBLite consensus disorder prediction 236 250 - -
Clacu11g0283 622 SUPERFAMILY L domain-like 23 206 - -
Clacu11g0283 622 MobiDBLite consensus disorder prediction 230 250 - -
Clacu11g0283 622 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Clacu11g0283 622 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0283 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 622 IPR046959 -
Clacu11g0283 622 Gene3D Ribonuclease Inhibitor 183 225 IPR032675 -
Clacu11g0283 622 MobiDBLite consensus disorder prediction 298 329 - -
Clacu11g0283 622 Gene3D Transferase(Phosphotransferase) domain 1 425 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1408 Clacu-Chr8:24163960 Clacu11g0283 Clacu-Chr11:2613618 1.90E-100 dispersed
Clacu10g1925 Clacu-Chr10:32873139 Clacu11g0283 Clacu-Chr11:2613618 1.90E-70 dispersed
Clacu11g0283 Clacu-Chr11:2613618 Clacu11g0407 Clacu-Chr11:3813284 7.40E-66 dispersed
Clacu11g0283 Clacu-Chr11:2613618 Clacu06g1513 Clacu-Chr6:26040511 5.60E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73936 PF00069 Pkinase 8.60E-26 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0283 K28077 - csv:101215919 1068.53