Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0291 ATGGCGGTGAAGAAAATGAAGTGGAGATCCATTTTCTCCAGCTGCTGCGAGGTTGATTCGCAGTCGTCGGAGGTGATGAAAGTAGTGGCGGCGAATAAGCCGAGTTCCTTCCAAAGGATTTCGAAACTGGATTTGAGTAACCCTAATTCCACTCTCTCTGAAGATCTTTCCATTTCTCTCGCCGGATCTGACATCCACGCTTTCACTCTCGCCGAATTGAAGCTCATCTCTCAGACCTTTTCTTCCTCAAACTTCCTTGGAGAAGGTGGATTCGGCCCCGTCTACAAAGGATTCCTCGATGACAATCTCAGGCCTGGCTTGTCTCCTCAGCCCGTCGCTATTAAACTCCTCGATTTGGATGGAACACAAGGCCACAGAGAATGGCTGACGGAGGTGATTTTTCTAGGACAGCTTAAGCACGCTCATCTAGTGAAGCTAATTGGATATTGCTGCGAAGACGAACATAGGATGCTTGTGTATGAGTATATGCCCAGAGGAAGCTTGGAGAATCAACTTTTCAAAAAATATTCGATCCCATTGCCATGGTCGACGAGAATGAAGATCGCTCTTGGAGCTGCCAAGGGTCTGGCCTTCCTCCACGAAGCAGATAAACCAGTAATTTACCGAGATTTCAAAGCCTCCAACATACTGCTCGACTCTGATTATACCGCGAAGCTGTCTGATTTTGGACTAGCCAAAGACGGTCCAGAAGGAGACAACACGCATGTCTCGACCCGAGTAATGGGGACGCATGGATATGCTGCGCCGGAGTATATAATGACGGGTCATTTGACGGCAATGAGTGACGTGTATAGCTTCGGAGTAGTGCTTTTGGAGTTGTTGACAGGGCGGCGGTCGGTGGAGAAGAGCAGCCGTAAGAGGCAACAGAACTTGGCAGAGTGGGCGAGGCCGATGCTGAATGATCCAAGGAAGCTAAGCCGTATAATAGACCCAAGACTTGAAGGCCAATACTCGGAAATGGGAGCTCAGAAAGCAGCCACATTGGCTTACCAATGCTTGAGCCACCGCCCAAAGCAGAGGCCCACCATGAGCGCCGTCGTCAAGGTATTAGAGCCGCTTAAGGATTTCGATGACATTTCTTCAGGCACCTTCGTTTATACGGTTCTCGCCCAAAACGATCTTCACAACAAACCAACGGGAAATTCAACTTTAGAAGAAGCTAAAAAGTAA 1191 48.7 MAVKKMKWRSIFSSCCEVDSQSSEVMKVVAANKPSSFQRISKLDLSNPNSTLSEDLSISLAGSDIHAFTLAELKLISQTFSSSNFLGEGGFGPVYKGFLDDNLRPGLSPQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHAHLVKLIGYCCEDEHRMLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPMLNDPRKLSRIIDPRLEGQYSEMGAQKAATLAYQCLSHRPKQRPTMSAVVKVLEPLKDFDDISSGTFVYTVLAQNDLHNKPTGNSTLEEAKK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2663138 2664938 - ClG42_11g0029100.10 Clacu11g0291 261168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0291 396 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0291 396 SUPERFAMILY Protein kinase-like (PK-like) 56 358 IPR011009 -
Clacu11g0291 396 PANTHER OS01G0588500 PROTEIN-RELATED 55 361 IPR050823 -
Clacu11g0291 396 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Clacu11g0291 396 FunFam Probable serine/threonine-protein kinase PBL8 163 375 - -
Clacu11g0291 396 Gene3D Transferase(Phosphotransferase) domain 1 163 371 - -
Clacu11g0291 396 CDD STKc_IRAK 86 360 - -
Clacu11g0291 396 Gene3D Phosphorylase Kinase; domain 1 44 162 - -
Clacu11g0291 396 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0291 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1505 Clacu-Chr3:28629813 Clacu11g0291 Clacu-Chr11:2663138 2.70E-119 dispersed
Clacu10g2251 Clacu-Chr10:35413049 Clacu11g0291 Clacu-Chr11:2663138 3.40E-127 dispersed
Clacu11g0291 Clacu-Chr11:2663138 Clacu11g1315 Clacu-Chr11:22418854 2.80E-111 dispersed
Clacu05g1736 Clacu-Chr5:26302471 Clacu11g0291 Clacu-Chr11:2663138 3.20E-126 transposed
Clacu07g1128 Clacu-Chr7:25918254 Clacu11g0291 Clacu-Chr11:2663138 4.30E-126 transposed
Clacu11g0291 Clacu-Chr11:2663138 Clacu03g1551 Clacu-Chr3:29089308 8.60E-169 wgd
Clacu11g0291 Clacu-Chr11:2663138 Clacu09g0107 Clacu-Chr9:985164 5.10E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73937 PF07714 PK_Tyr_Ser-Thr 9.90E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0291 - - - 0.0