Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0293 ATGGCTATAGCTATGATAGCGATTGGAATCGAGTTAGAAGGTTCACTGGCTATGTCAAATTTAGCGGCCCGCGTCCACTGGCCAGCTTTCTTTCGACCCCACACTCCAAAATCTACACCGTGTGCATCCTCCATTACAGCTCTTAAACCGTTTTTTCTCTTTGTGATCCCTTCGTCATTCATATCCTTATCGCCGTCGCCGCCCATCTCCGACCAAAGTTTTTGTTCTCTCAAATTCTCTTACAAGTTTACTATACAAGCCTGTTTCACTGCGTCTTTGGTGGCGGCAGATATCATGGTTCCACAGCGCCACCACAACAGCAACGATGGCGTTTCTCAAAGGGTCAACAGCCCACGATTCTCGGGACCTATAACTCGTCGTGCACATTCCTTCAAGCGTAACAACAACAGCACTGACACTCATAGTAGTGCTAATTCAAACATCCTCAACAATAATGGGCTTAGTAGTCACCATGAGATTGATCTTCCTGTGAACTCACCCAGATCAGAAGCTTTCAGAAGCACGGTTCAAGTGGATGGCTTTGAATCTGCTTTGGAACGGAAGACAGCTCCACATGTTAGCCAGAGAAACCATGGGGGCGTTGCTGCTAAAAGTTTGTTAAATCCTGGTTTTGTTTCTCTGGACTTTAGGTTAAGGGAAAAAAGGAAATTGGGGCATTTGATGTTCATGATGTTCTGTGGTCTCTGCTTGTTTCTGGGTATTCTAAAGATCTGCATGAATGGTTGGTTTGGATCAGTCATTGAGATCAACGAATCACACCAGGATACACCTGACTCCATCAAAAGTCAAAATCAAGTGGATCAAAATTCTCATAATCTTAGGCACAAGGAAGGGGAAGCTAGTTCTGAGCGAACTCTGATGATGGAATCAGGTGTAGTTGGTAGTCAAAATGGCATGGAGCATTCAGAAATTTGGATGAAACCTGACAGCGAGAATTTTGCTCCTTGCATCGATGAGGGAAGGCGCCACAAAAAGCTTGATGCGAAGATAAACGGATACATTCTTGTAAATGCCAACGGTGGCTTGAATCAGATGAGATTTGGGATCTGTGATATGGTTGTCATTGCAAAGGTTATGAAAGCAGCGCTTGTCCTTCCTTCGCTTGATCATAAATCCTACTGGGCAGATGAAAGTGGCTTTAAAGATCTCTTCAATTGGCAACACTTTCTTGAGACTCTGGAAGACGATGTTCATATAATAGAGACACTACCACCTGCCTATGCCGAATTAGTGCCTTTCAACAAAACACCAATTTCTTGGTCCAAGATTGGTTACTATAAAGCAGAGGTCCTCCCACTGCTGAAGCAGCACAAGGCGATGTATTTTACACACACGGATTCCCGGCTGGCTAACAATGGTCTCCCAAGTTCTATACAGAAGTTGAGATGTCGTGTCAATTTCCAAGCGTTAAAATATTCGGCTCCAATTGAAGAACTGGGGAACACCTTGGTCTCTAGGATGCGACAGAATGGAAGCCCTTATATTGCTCTTCATTTGAGGTATGAGAAGGATATGCTTGCATTTACAGGCTGCAGTCATAATTTGACAACAGCGGAAGATGATGAGTTGGGTAGAATGCGTTATGAAGTTGCCCATTGGAAAGAGAAGGAAATCAACGGGACAGAGAGAAGGTTGCTCGGTGGCTGTCCACTGACCCCAAGGGAGACTTCTCTTTTGCTCAGAGGGTTGGGTTTTCCATGCAGCACCAGAATATACTTGGTAGCTGGTGAGGCTTATGGAAATGGAAGTATGCAATATCTTAAGGATGATTTCCCCAATATATATTCGCATTCTACACTCACCACAGAAGAAGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTGGCTGGCATCGACTACGTTGTTGCCCTTCAAAGCGATGTTTTTATTTATACATATGATGGAAATATGGCAAAGGCAATTCAAGGTCACAGGCGTTTTGAGGGCTTCAAGAAGACCATAAGTCCAGACAAGGCGAATTTTGTCAAACTTGTTGATGAACTTGATGAAGGAAAGATATCATGGAAAAAATTCAGTTCGAAAGTGAAAGCACTTCATAAAAATCGGGCAGGGGCTCCATATCTTAGAGAAGCTGGAGAAATCCCAAAGTTGGAGGAGAGTTTTTATGCAAATCCCCTTCCAGGATGCATTTGTGATAAAACCAAAGAAAAATCTGGTGCAGAACTTAGTTGCCTTCATATCTTTCATAGCAGTGGTAGCAGGAAACTGGGGAATCTGCTGGTTCCATATCAAACATCTTTTGCTTGCAGAAGGATACTGTTGGAACAACTAAATAAAGCAAAGGCACCAATTATTCTGAAAAGAGATGGTGTCTCAACAGTCAAAACTCTCCTCACTCTCCCAATCTCCTCTCTCTCTTGCTTTTGCTCTCTCGCATTTGATGTTTCGATGGCTAACGATGATACCTCTGCAACATTTCGATGGTCGGAAGAGAGGAGAAGGGTTTTAGTGATGGATAAGAACGAAGAGACGGGGAGCCCTGGTTGGGGTACTTCACTTTTCGTACAAACCACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCTGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATACTCTTCAAAAGACGATGAGGGTGGCAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGCTTAAAGGATTCTCTAGTCCTCCTCAAGTAAAAACTGCAGGAACCTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGTATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCTGGGAGATTGCGAACTGCTCTTAATAATAGTCAGAGTCAATCTCGGGTAGAACCTCATCTTGAACCACAGGTCCTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAAAAAACTCCTTCCATGAGTGAGTTGAACGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTACGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGTTTCTGAAAAAGCATCTTCTTACTCATCCTTGAGCCGTTACATACTAACCACACGCAGATGCTACTGTATCCTAACTCGGTTGCCATTCTTCGAATTACATTTCGGTGTATTGAATAGCATCTTCACCGAAGAAAGGCTTCAAAGATTAACAAAAGGTATTGGTGTTTTGAATTTGGAATCCACAGAGAATTTGAGCAATGAAGAAGATCTGGTGGAAGACATAGGTTGCATGTCTTTAGATCAGAGTGTAGCTGAAGATGTTCATGAGGGAAAAGAGGAATATTTTCAAAGAATGGGTGATGAAAATCAAGTTGAGCATCAAATGCTCGATGAAAATTATCAATGTCTGAAAAAGGGCATTAGTGATGATATAGTTGCCACACTTGATCCAGAACCAGAGGTAGTTACAGCCAAAATAGAATCTAGTACTGTACATAAGGAAAATCATGATATCGATGTTGATGATTTTACAAGAAACAAGCAAGCAGTTGATAGACGTTTTCCGAATGCTGTTCTACCTCTCCTTCGCTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTTTTCAGGGGTCTCCAAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGACAGAGGAGGCATCTTTCTCTGGCCAGGATGATTCCGCGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCGAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCGGGCAAAACAGTTCTACATGTTGCTGGCTCAACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCATGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATTGTTTGTTCTAATCTGGGTATCCTGTCAGCTTCAGTTTTATCAATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGTTTGCTGATGCCAGTGTTACCAAATGACATGCTGGACTTTTTGGATGCTCCTGTTCCTTACATAGTTGGTGTGAAAAATAAAACCAGTGAAGTACAATCAAAGTTAACCAATGCCGTCTTGGTTGATGTGAACAAAAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAGAAGGAGTTATTCTCATCATTAAGACCGTATCATGCGGAGCTAGTTGGAGAGAGTTTTTTAGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCTGCCAAGGGTTTCCTAAAAGTGCTTAGATTATACTTGGACTCTCTCTGCTCTAACCTTCGTTCACATACAATTACTAATGTACAATCAAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATCGAGTCGTTCCCAAGCCGTGATCGGCCGTTTTTGAAGTTGCCTTTATTTTTATGGATTTCCGTAGAGATGTCAGAGACAAAGGGCTGGCAGACAGAAGCAGAAGAGGCAGAGAGTTGCAGTCATAATATTAGCAAAGAGAAAGAAAGGACTCAATGGCAAGAGCTGGAACATCAAGCTTTGATCTTTAAGTACATGGTCTCCGGCATTCCTGTCCCTCCTGATCTGCTTTTCACCATTAAAAGAACTTCTTTGTCTTTGGATACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATTGATCCGGAGCCTGGAAGATGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAAAGACATATGCATAGAGGTAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTTTAAACTCTAATCCATCATCATCATCATCACTTACCCATAACTCCACTCATTCCTTTGCTTCACTCACCAACTCTGAAACACATCCCCATCCCCATCCTTTTCTCTATCAACATGCTTCTGCTTCTTCTGCTCATTCATCCTTACTTCCAGATTACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAAGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCCATGGAAGATTCTTGGCAGCTAACTCCTTTGACAATGAGTAGCTCTTCCTCATCTTCCAGATACAAGAATGGTTCTGCTTTAGAAGGTGATTACTCTTCTTACTTGCAGCTACAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGATTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAATCTTGGGTTGATTTGGATGATAAGTCATCCAACAATACTGGCGCAGTTTCTGCAACTAGGCTTTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTAA 5895 42.61 MAIAMIAIGIELEGSLAMSNLAARVHWPAFFRPHTPKSTPCASSITALKPFFLFVIPSSFISLSPSPPISDQSFCSLKFSYKFTIQACFTASLVAADIMVPQRHHNSNDGVSQRVNSPRFSGPITRRAHSFKRNNNSTDTHSSANSNILNNNGLSSHHEIDLPVNSPRSEAFRSTVQVDGFESALERKTAPHVSQRNHGGVAAKSLLNPGFVSLDFRLREKRKLGHLMFMMFCGLCLFLGILKICMNGWFGSVIEINESHQDTPDSIKSQNQVDQNSHNLRHKEGEASSERTLMMESGVVGSQNGMEHSEIWMKPDSENFAPCIDEGRRHKKLDAKINGYILVNANGGLNQMRFGICDMVVIAKVMKAALVLPSLDHKSYWADESGFKDLFNWQHFLETLEDDVHIIETLPPAYAELVPFNKTPISWSKIGYYKAEVLPLLKQHKAMYFTHTDSRLANNGLPSSIQKLRCRVNFQALKYSAPIEELGNTLVSRMRQNGSPYIALHLRYEKDMLAFTGCSHNLTTAEDDELGRMRYEVAHWKEKEINGTERRLLGGCPLTPRETSLLLRGLGFPCSTRIYLVAGEAYGNGSMQYLKDDFPNIYSHSTLTTEEELNPFKNHQNMLAGIDYVVALQSDVFIYTYDGNMAKAIQGHRRFEGFKKTISPDKANFVKLVDELDEGKISWKKFSSKVKALHKNRAGAPYLREAGEIPKLEESFYANPLPGCICDKTKEKSGAELSCLHIFHSSGSRKLGNLLVPYQTSFACRRILLEQLNKAKAPIILKRDGVSTVKTLLTLPISSLSCFCSLAFDVSMANDDTSATFRWSEERRRVLVMDKNEETGSPGWGTSLFVQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSEKASSYSSLSRYILTTRRCYCILTRLPFFELHFGVLNSIFTEERLQRLTKGIGVLNLESTENLSNEEDLVEDIGCMSLDQSVAEDVHEGKEEYFQRMGDENQVEHQMLDENYQCLKKGISDDIVATLDPEPEVVTAKIESSTVHKENHDIDVDDFTRNKQAVDRRFPNAVLPLLRYYQYESSESSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSADLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALMVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKLPLFLWISVEMSETKGWQTEAEEAESCSHNISKEKERTQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSSSLTHNSTHSFASLTNSETHPHPHPFLYQHASASSAHSSLLPDYRYVYGGKEEDVDEQPFVREEQHSGNMRGFSASSMEDSWQLTPLTMSSSSSSSRYKNGSALEGDYSSYLQLQSFGKYNEMQSKMEREEPQKIMHHFFDEWSAKDRESWVDLDDKSSNNTGAVSATRLSMSIPNHDFSSIFTSNKHNEN 1964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2672614 2691079 + ClG42_11g0029300.10 Clacu11g0293 261170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0293 1964 ProSiteProfiles Tripartite DENN domain profile. 981 1644 IPR037516 -
Clacu11g0293 1964 Gene3D - 936 1143 - -
Clacu11g0293 1964 ProSiteProfiles WRC domain profile. 1712 1756 IPR014977 -
Clacu11g0293 1964 Pfam QLQ 1646 1675 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 1763 1800 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 261 288 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 1274 1305 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 1763 1795 - -
Clacu11g0293 1964 CDD O-FucT_plant 340 661 IPR024709 -
Clacu11g0293 1964 Pfam DENN (AEX-3) domain 1404 1503 IPR001194 -
Clacu11g0293 1964 Gene3D - 1401 1566 IPR043153 -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 105 148 - -
Clacu11g0293 1964 PANTHER OS02G0726500 PROTEIN-RELATED 232 732 - GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0009507(PANTHER)
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 128 148 - -
Clacu11g0293 1964 SMART DENN_cls 1106 1504 IPR001194 -
Clacu11g0293 1964 ProSiteProfiles QLQ domain profile. 1642 1677 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g0293 1964 Pfam GDP-fucose protein O-fucosyltransferase 340 655 IPR019378 -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 261 276 - -
Clacu11g0293 1964 FunFam O-fucosyltransferase 28 471 665 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 105 120 - -
Clacu11g0293 1964 Pfam WRC 1713 1755 IPR014977 -
Clacu11g0293 1964 SMART QLQ_2 1646 1677 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g0293 1964 Pfam uDENN domain 999 1076 IPR005113 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1409 Clacu-Chr7:28921197 Clacu11g0293 Clacu-Chr11:2672614 9.10E-49 dispersed
Clacu08g1831 Clacu-Chr8:27567003 Clacu11g0293 Clacu-Chr11:2672614 4.40E-29 dispersed
Clacu10g1901 Clacu-Chr10:32642736 Clacu11g0293 Clacu-Chr11:2672614 9.20E-28 dispersed
Clacu10g2140 Clacu-Chr10:34572962 Clacu11g0293 Clacu-Chr11:2672614 1.60E-169 dispersed
Clacu11g0293 Clacu-Chr11:2672614 Clacu11g0789 Clacu-Chr11:7786924 4.70E-159 dispersed
Clacu06g0139 Clacu-Chr6:1560168 Clacu11g0293 Clacu-Chr11:2672614 1.10E-129 transposed
Clacu10g1255 Clacu-Chr10:25398630 Clacu11g0293 Clacu-Chr11:2672614 3.60E-75 transposed
Clacu11g0293 Clacu-Chr11:2672614 Clacu03g1560 Clacu-Chr3:29192074 1.30E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48598 PF10250 O-FucT 3.60E-69 CL0113 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0293 - - - 0.0