Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0293 ATGGCTATAGCTATGATAGCGATTGGAATCGAGTTAGAAGGTTCACTGGCTATGTCAAATTTAGCGGCCCGCGTCCACTGGCCAGCTTTCTTTCGACCCCACACTCCAAAATCTACACCGTGTGCATCCTCCATTACAGCTCTTAAACCGTTTTTTCTCTTTGTGATCCCTTCGTCATTCATATCCTTATCGCCGTCGCCGCCCATCTCCGACCAAAGTTTTTGTTCTCTCAAATTCTCTTACAAGTTTACTATACAAGCCTGTTTCACTGCGTCTTTGGTGGCGGCAGATATCATGGTTCCACAGCGCCACCACAACAGCAACGATGGCGTTTCTCAAAGGGTCAACAGCCCACGATTCTCGGGACCTATAACTCGTCGTGCACATTCCTTCAAGCGTAACAACAACAGCACTGACACTCATAGTAGTGCTAATTCAAACATCCTCAACAATAATGGGCTTAGTAGTCACCATGAGATTGATCTTCCTGTGAACTCACCCAGATCAGAAGCTTTCAGAAGCACGGTTCAAGTGGATGGCTTTGAATCTGCTTTGGAACGGAAGACAGCTCCACATGTTAGCCAGAGAAACCATGGGGGCGTTGCTGCTAAAAGTTTGTTAAATCCTGGTTTTGTTTCTCTGGACTTTAGGTTAAGGGAAAAAAGGAAATTGGGGCATTTGATGTTCATGATGTTCTGTGGTCTCTGCTTGTTTCTGGGTATTCTAAAGATCTGCATGAATGGTTGGTTTGGATCAGTCATTGAGATCAACGAATCACACCAGGATACACCTGACTCCATCAAAAGTCAAAATCAAGTGGATCAAAATTCTCATAATCTTAGGCACAAGGAAGGGGAAGCTAGTTCTGAGCGAACTCTGATGATGGAATCAGGTGTAGTTGGTAGTCAAAATGGCATGGAGCATTCAGAAATTTGGATGAAACCTGACAGCGAGAATTTTGCTCCTTGCATCGATGAGGGAAGGCGCCACAAAAAGCTTGATGCGAAGATAAACGGATACATTCTTGTAAATGCCAACGGTGGCTTGAATCAGATGAGATTTGGGATCTGTGATATGGTTGTCATTGCAAAGGTTATGAAAGCAGCGCTTGTCCTTCCTTCGCTTGATCATAAATCCTACTGGGCAGATGAAAGTGGCTTTAAAGATCTCTTCAATTGGCAACACTTTCTTGAGACTCTGGAAGACGATGTTCATATAATAGAGACACTACCACCTGCCTATGCCGAATTAGTGCCTTTCAACAAAACACCAATTTCTTGGTCCAAGATTGGTTACTATAAAGCAGAGGTCCTCCCACTGCTGAAGCAGCACAAGGCGATGTATTTTACACACACGGATTCCCGGCTGGCTAACAATGGTCTCCCAAGTTCTATACAGAAGTTGAGATGTCGTGTCAATTTCCAAGCGTTAAAATATTCGGCTCCAATTGAAGAACTGGGGAACACCTTGGTCTCTAGGATGCGACAGAATGGAAGCCCTTATATTGCTCTTCATTTGAGGTATGAGAAGGATATGCTTGCATTTACAGGCTGCAGTCATAATTTGACAACAGCGGAAGATGATGAGTTGGGTAGAATGCGTTATGAAGTTGCCCATTGGAAAGAGAAGGAAATCAACGGGACAGAGAGAAGGTTGCTCGGTGGCTGTCCACTGACCCCAAGGGAGACTTCTCTTTTGCTCAGAGGGTTGGGTTTTCCATGCAGCACCAGAATATACTTGGTAGCTGGTGAGGCTTATGGAAATGGAAGTATGCAATATCTTAAGGATGATTTCCCCAATATATATTCGCATTCTACACTCACCACAGAAGAAGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTGGCTGGCATCGACTACGTTGTTGCCCTTCAAAGCGATGTTTTTATTTATACATATGATGGAAATATGGCAAAGGCAATTCAAGGTCACAGGCGTTTTGAGGGCTTCAAGAAGACCATAAGTCCAGACAAGGCGAATTTTGTCAAACTTGTTGATGAACTTGATGAAGGAAAGATATCATGGAAAAAATTCAGTTCGAAAGTGAAAGCACTTCATAAAAATCGGGCAGGGGCTCCATATCTTAGAGAAGCTGGAGAAATCCCAAAGTTGGAGGAGAGTTTTTATGCAAATCCCCTTCCAGGATGCATTTGTGATAAAACCAAAGAAAAATCTGGTGCAGAACTTAGTTGCCTTCATATCTTTCATAGCAGTGGTAGCAGGAAACTGGGGAATCTGCTGGTTCCATATCAAACATCTTTTGCTTGCAGAAGGATACTGTTGGAACAACTAAATAAAGCAAAGGCACCAATTATTCTGAAAAGAGATGGTGTCTCAACAGTCAAAACTCTCCTCACTCTCCCAATCTCCTCTCTCTCTTGCTTTTGCTCTCTCGCATTTGATGTTTCGATGGCTAACGATGATACCTCTGCAACATTTCGATGGTCGGAAGAGAGGAGAAGGGTTTTAGTGATGGATAAGAACGAAGAGACGGGGAGCCCTGGTTGGGGTACTTCACTTTTCGTACAAACCACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCTGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATACTCTTCAAAAGACGATGAGGGTGGCAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGCTTAAAGGATTCTCTAGTCCTCCTCAAGTAAAAACTGCAGGAACCTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGTATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCTGGGAGATTGCGAACTGCTCTTAATAATAGTCAGAGTCAATCTCGGGTAGAACCTCATCTTGAACCACAGGTCCTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAAAAAACTCCTTCCATGAGTGAGTTGAACGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTACGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGTTTCTGAAAAAGCATCTTCTTACTCATCCTTGAGCCGTTACATACTAACCACACGCAGATGCTACTGTATCCTAACTCGGTTGCCATTCTTCGAATTACATTTCGGTGTATTGAATAGCATCTTCACCGAAGAAAGGCTTCAAAGATTAACAAAAGGTATTGGTGTTTTGAATTTGGAATCCACAGAGAATTTGAGCAATGAAGAAGATCTGGTGGAAGACATAGGTTGCATGTCTTTAGATCAGAGTGTAGCTGAAGATGTTCATGAGGGAAAAGAGGAATATTTTCAAAGAATGGGTGATGAAAATCAAGTTGAGCATCAAATGCTCGATGAAAATTATCAATGTCTGAAAAAGGGCATTAGTGATGATATAGTTGCCACACTTGATCCAGAACCAGAGGTAGTTACAGCCAAAATAGAATCTAGTACTGTACATAAGGAAAATCATGATATCGATGTTGATGATTTTACAAGAAACAAGCAAGCAGTTGATAGACGTTTTCCGAATGCTGTTCTACCTCTCCTTCGCTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTTTTCAGGGGTCTCCAAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGACAGAGGAGGCATCTTTCTCTGGCCAGGATGATTCCGCGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCGAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCGGGCAAAACAGTTCTACATGTTGCTGGCTCAACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCATGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATTGTTTGTTCTAATCTGGGTATCCTGTCAGCTTCAGTTTTATCAATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGTTTGCTGATGCCAGTGTTACCAAATGACATGCTGGACTTTTTGGATGCTCCTGTTCCTTACATAGTTGGTGTGAAAAATAAAACCAGTGAAGTACAATCAAAGTTAACCAATGCCGTCTTGGTTGATGTGAACAAAAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAGAAGGAGTTATTCTCATCATTAAGACCGTATCATGCGGAGCTAGTTGGAGAGAGTTTTTTAGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCTGCCAAGGGTTTCCTAAAAGTGCTTAGATTATACTTGGACTCTCTCTGCTCTAACCTTCGTTCACATACAATTACTAATGTACAATCAAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATCGAGTCGTTCCCAAGCCGTGATCGGCCGTTTTTGAAGTTGCCTTTATTTTTATGGATTTCCGTAGAGATGTCAGAGACAAAGGGCTGGCAGACAGAAGCAGAAGAGGCAGAGAGTTGCAGTCATAATATTAGCAAAGAGAAAGAAAGGACTCAATGGCAAGAGCTGGAACATCAAGCTTTGATCTTTAAGTACATGGTCTCCGGCATTCCTGTCCCTCCTGATCTGCTTTTCACCATTAAAAGAACTTCTTTGTCTTTGGATACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATTGATCCGGAGCCTGGAAGATGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAAAGACATATGCATAGAGGTAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTTTAAACTCTAATCCATCATCATCATCATCACTTACCCATAACTCCACTCATTCCTTTGCTTCACTCACCAACTCTGAAACACATCCCCATCCCCATCCTTTTCTCTATCAACATGCTTCTGCTTCTTCTGCTCATTCATCCTTACTTCCAGATTACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAAGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCCATGGAAGATTCTTGGCAGCTAACTCCTTTGACAATGAGTAGCTCTTCCTCATCTTCCAGATACAAGAATGGTTCTGCTTTAGAAGGTGATTACTCTTCTTACTTGCAGCTACAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGATTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAATCTTGGGTTGATTTGGATGATAAGTCATCCAACAATACTGGCGCAGTTTCTGCAACTAGGCTTTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTAA 5895 42.61 MAIAMIAIGIELEGSLAMSNLAARVHWPAFFRPHTPKSTPCASSITALKPFFLFVIPSSFISLSPSPPISDQSFCSLKFSYKFTIQACFTASLVAADIMVPQRHHNSNDGVSQRVNSPRFSGPITRRAHSFKRNNNSTDTHSSANSNILNNNGLSSHHEIDLPVNSPRSEAFRSTVQVDGFESALERKTAPHVSQRNHGGVAAKSLLNPGFVSLDFRLREKRKLGHLMFMMFCGLCLFLGILKICMNGWFGSVIEINESHQDTPDSIKSQNQVDQNSHNLRHKEGEASSERTLMMESGVVGSQNGMEHSEIWMKPDSENFAPCIDEGRRHKKLDAKINGYILVNANGGLNQMRFGICDMVVIAKVMKAALVLPSLDHKSYWADESGFKDLFNWQHFLETLEDDVHIIETLPPAYAELVPFNKTPISWSKIGYYKAEVLPLLKQHKAMYFTHTDSRLANNGLPSSIQKLRCRVNFQALKYSAPIEELGNTLVSRMRQNGSPYIALHLRYEKDMLAFTGCSHNLTTAEDDELGRMRYEVAHWKEKEINGTERRLLGGCPLTPRETSLLLRGLGFPCSTRIYLVAGEAYGNGSMQYLKDDFPNIYSHSTLTTEEELNPFKNHQNMLAGIDYVVALQSDVFIYTYDGNMAKAIQGHRRFEGFKKTISPDKANFVKLVDELDEGKISWKKFSSKVKALHKNRAGAPYLREAGEIPKLEESFYANPLPGCICDKTKEKSGAELSCLHIFHSSGSRKLGNLLVPYQTSFACRRILLEQLNKAKAPIILKRDGVSTVKTLLTLPISSLSCFCSLAFDVSMANDDTSATFRWSEERRRVLVMDKNEETGSPGWGTSLFVQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSEKASSYSSLSRYILTTRRCYCILTRLPFFELHFGVLNSIFTEERLQRLTKGIGVLNLESTENLSNEEDLVEDIGCMSLDQSVAEDVHEGKEEYFQRMGDENQVEHQMLDENYQCLKKGISDDIVATLDPEPEVVTAKIESSTVHKENHDIDVDDFTRNKQAVDRRFPNAVLPLLRYYQYESSESSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSADLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALMVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKLPLFLWISVEMSETKGWQTEAEEAESCSHNISKEKERTQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSSSLTHNSTHSFASLTNSETHPHPHPFLYQHASASSAHSSLLPDYRYVYGGKEEDVDEQPFVREEQHSGNMRGFSASSMEDSWQLTPLTMSSSSSSSRYKNGSALEGDYSSYLQLQSFGKYNEMQSKMEREEPQKIMHHFFDEWSAKDRESWVDLDDKSSNNTGAVSATRLSMSIPNHDFSSIFTSNKHNEN 1964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2672614 2691079 + ClG42_11g0029300.10 Clacu11g0293 261170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0293 1964 ProSiteProfiles Tripartite DENN domain profile. 981 1644 IPR037516 -
Clacu11g0293 1964 Gene3D - 936 1143 - -
Clacu11g0293 1964 ProSiteProfiles WRC domain profile. 1712 1756 IPR014977 -
Clacu11g0293 1964 Pfam QLQ 1646 1675 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 1763 1800 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 261 288 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 1274 1305 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 1763 1795 - -
Clacu11g0293 1964 CDD O-FucT_plant 340 661 IPR024709 -
Clacu11g0293 1964 Pfam DENN (AEX-3) domain 1404 1503 IPR001194 -
Clacu11g0293 1964 Gene3D - 1401 1566 IPR043153 -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 105 148 - -
Clacu11g0293 1964 PANTHER OS02G0726500 PROTEIN-RELATED 232 732 - GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0009507(PANTHER)
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 128 148 - -
Clacu11g0293 1964 SMART DENN_cls 1106 1504 IPR001194 -
Clacu11g0293 1964 ProSiteProfiles QLQ domain profile. 1642 1677 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g0293 1964 Pfam GDP-fucose protein O-fucosyltransferase 340 655 IPR019378 -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 261 276 - -
Clacu11g0293 1964 FunFam O-fucosyltransferase 28 471 665 - -
Clacu11g0293 1964 MobiDBLite consensus disorder prediction 105 120 - -
Clacu11g0293 1964 Pfam WRC 1713 1755 IPR014977 -
Clacu11g0293 1964 SMART QLQ_2 1646 1677 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu11g0293 1964 Pfam uDENN domain 999 1076 IPR005113 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0293 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1409 Clacu-Chr7:28921197 Clacu11g0293 Clacu-Chr11:2672614 9.10E-49 dispersed
Clacu08g1831 Clacu-Chr8:27567003 Clacu11g0293 Clacu-Chr11:2672614 4.40E-29 dispersed
Clacu10g1901 Clacu-Chr10:32642736 Clacu11g0293 Clacu-Chr11:2672614 9.20E-28 dispersed
Clacu10g2140 Clacu-Chr10:34572962 Clacu11g0293 Clacu-Chr11:2672614 1.60E-169 dispersed
Clacu11g0293 Clacu-Chr11:2672614 Clacu11g0789 Clacu-Chr11:7786924 4.70E-159 dispersed
Clacu06g0139 Clacu-Chr6:1560168 Clacu11g0293 Clacu-Chr11:2672614 1.10E-129 transposed
Clacu10g1255 Clacu-Chr10:25398630 Clacu11g0293 Clacu-Chr11:2672614 3.60E-75 transposed
Clacu11g0293 Clacu-Chr11:2672614 Clacu03g1560 Clacu-Chr3:29192074 1.30E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g90 . . . Bda11g01020 Bpe01g00613 . Bma07g00561 Bma11g00608 Cmo10g00789 Cmo11g00738 Cma05g01420 . Car05g01337 . Sed08g0909 Cpe04g01028 Cpe18g00326 Bhi02g01822 Tan09g1089 Cmetu05g1875 . Hepe09g0912 . . Cla11g00136 Cam11g0157 Cec11g0158 Cco11g0170 Clacu11g0293 . Cre11g0644 . . . . Lsi06g00321 Csa02g00019 . Cme02g00291 Blo08g00362 . Bda02g00370 . Bpe08g00542 Bpe13g01232 . . . Cmo05g01417 . Cma10g00759 Cma11g00725 Car10g00681 Car11g00602 . . . . . . . . . Cla03g01458 Cam03g1536 Cec03g1578 Cco03g1571 Clacu03g1560 Cmu03g2116 Cre03g1789 . Csa01g02970 Chy02g01265 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1901 . 1 414 GRF Transcription Factor Family AT2G36400 51.9 2.6e-72 269.6
Clacu11g0293 . 1646 1746 GRF Transcription Factor Family AT3G13960 75.2 8.1e-42 168.3
Clacu03g1560 . 3 105 GRF Transcription Factor Family AT3G13960 70.9 2.4e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003568 1 5 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48598 PF10250 O-FucT 3.60E-69 CL0113 Clacu TF