Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g0299 | ATGCCGGTGCATCTCACACCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATCGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACGCGATCTGGAAATTTAGAGCAGCCTGCCAATGGTAATGGTCATTTGGGTGCCAGAAATCCAGTTCAGGATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCGCTGAATCCTTATCAGGGACGATGGGCTATAAAAGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCGAAAGGAGATGGTAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACTTGCTTCAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACATGATTTCTAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTCTCTTTTAGACCTATCAGTGATATTGAGAATGCTGAAACCAACTCTATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTATTGAGCTGACACTCTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAATTGCAAGAAATAATTTACTCGGGCCTTTCTCCAGTGTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGAACTGGTACGATGGTGGTGGGAAGAATACTACTTCTCTATCTATTTCTAAAGAAATCATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATCGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGACGATGTCAAGTTTGGTGAAATAATAAGCAGCAAAATTTTCGATCAATTTCTTTTTAGGCTCAAAATTAAGGAGGAGTCGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAAGATACCTTTCAGTGTGTGCTTTTCTCGGTTGAATGCCGTGGAGGACTTCGAGCACATCAAGAAGCAGGAGCCGCATATTGATTATTACACACAAAACACAGAAACAACCATTACAGACAATGGAACATCATGA | 1941 | 42.4 | MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATRSGNLEQPANGNGHLGARNPVQDVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYMISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISDIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSIELTLWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRNWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIISSKIFDQFLFRLKIKEESYGDEQRVKNTVVKADKIPFSVCFSRLNAVEDFEHIKKQEPHIDYYTQNTETTITDNGTS | 646 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2721104 | 2725312 | + | ClG42_11g0029900.10 | Clacu11g0299 | 261176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g0299 | 646 | SUPERFAMILY | Nucleic acid-binding proteins | 443 | 612 | IPR012340 | - | |
| Clacu11g0299 | 646 | Gene3D | - | 430 | 614 | IPR012340 | - | |
| Clacu11g0299 | 646 | Gene3D | - | 176 | 286 | IPR012340 | - | |
| Clacu11g0299 | 646 | SUPERFAMILY | Nucleic acid-binding proteins | 294 | 425 | IPR012340 | - | |
| Clacu11g0299 | 646 | FunFam | Replication protein A subunit | 289 | 427 | - | - | |
| Clacu11g0299 | 646 | Pfam | Replication protein A OB domain | 300 | 404 | IPR031657 | - | |
| Clacu11g0299 | 646 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 178 | 592 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Clacu11g0299 | 646 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 97 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Clacu11g0299 | 646 | CDD | RPA1N | 9 | 98 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Clacu11g0299 | 646 | CDD | RPA1_DBD_B | 311 | 418 | - | - | |
| Clacu11g0299 | 646 | Gene3D | - | 3 | 111 | IPR012340 | - | |
| Clacu11g0299 | 646 | Pfam | OB-fold nucleic acid binding domain | 192 | 262 | IPR004365 | GO:0003676(InterPro) | |
| Clacu11g0299 | 646 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 106 | IPR012340 | - | |
| Clacu11g0299 | 646 | Pfam | Replication factor-A C terminal domain | 462 | 606 | IPR013955 | - | |
| Clacu11g0299 | 646 | NCBIfam | replication factor-a protein 1 (rpa1) | 4 | 607 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Clacu11g0299 | 646 | Gene3D | - | 289 | 429 | IPR012340 | - | |
| Clacu11g0299 | 646 | FunFam | Replication protein A subunit | 4 | 111 | - | - | |
| Clacu11g0299 | 646 | CDD | RPA1_DBD_C | 446 | 613 | IPR047192 | - | |
| Clacu11g0299 | 646 | FunFam | Replication protein A subunit | 428 | 616 | - | - | |
| Clacu11g0299 | 646 | FunFam | Replication protein A subunit | 176 | 285 | - | - | |
| Clacu11g0299 | 646 | CDD | RPA1_DBD_A | 179 | 281 | - | - | |
| Clacu11g0299 | 646 | SUPERFAMILY | Nucleic acid-binding proteins | 176 | 290 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g1663 | Clacu-Chr6:27414588 | Clacu11g0299 | Clacu-Chr11:2721104 | 1.20E-79 | dispersed | |
| Clacu10g0107 | Clacu-Chr10:1330248 | Clacu11g0299 | Clacu-Chr11:2721104 | 5.20E-195 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g0299 | K07466 | - | csv:101207583 | 1155.2 |