Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0303 ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTACCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTATAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA 756 47.09 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2748373 2750875 + ClG42_11g0030300.10 Clacu11g0303 261180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0303 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Clacu11g0303 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu11g0303 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Clacu11g0303 251 Pfam PHD-finger 198 244 IPR019787 -
Clacu11g0303 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu11g0303 251 CDD PHD_AL_plant 197 247 IPR044104 -
Clacu11g0303 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Clacu11g0303 251 FunFam PHD finger alfin-like protein 190 246 - -
Clacu11g0303 251 SMART PHD_3 197 245 IPR001965 -
Clacu11g0303 251 MobiDBLite consensus disorder prediction 145 191 - -
Clacu11g0303 251 MobiDBLite consensus disorder prediction 145 164 - -
Clacu11g0303 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1146 Clacu-Chr8:21538971 Clacu11g0303 Clacu-Chr11:2748373 5.90E-117 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu11g0303 Clacu-Chr11:2748373 3.30E-78 dispersed
Clacu10g0742 Clacu-Chr10:10688840 Clacu11g0303 Clacu-Chr11:2748373 4.40E-99 transposed
Clacu11g0303 Clacu-Chr11:2748373 Clacu03g1569 Clacu-Chr3:29272895 9.10E-23 wgd
Clacu11g0303 Clacu-Chr11:2748373 Clacu09g0089 Clacu-Chr9:848848 1.30E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48600 PF12165 Alfin 9.00E-70 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0303 K26274 - rcu:8272513 460.685