Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0310 | ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGACACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTATTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCATAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGCGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTCGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGCGAACTTCTGGTACATCCTTTCATCAAAAACAACCTTCTAATTTTTATTTGGAACAGGAGTCAGCCACAGGCTCTTCCACTTTGA | 1047 | 41.64 | MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLTQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKNNLLIFIWNRSQPQALPL | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2793512 | 2796030 | + | ClG42_11g0031000.10 | Clacu11g0310 | 261187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0310 | 348 | FunFam | Mitogen-activated protein kinase kinase 1 | 52 | 149 | - | - | |
Clacu11g0310 | 348 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 337 | - | - | |
Clacu11g0310 | 348 | CDD | PKc_MAPKK_plant_like | 68 | 331 | - | - | |
Clacu11g0310 | 348 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 341 | IPR011009 | - | |
Clacu11g0310 | 348 | ProSiteProfiles | Protein kinase domain profile. | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0310 | 348 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 46 | 331 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Clacu11g0310 | 348 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0310 | 348 | FunFam | mitogen-activated protein kinase kinase 3 | 150 | 334 | - | - | |
Clacu11g0310 | 348 | SMART | serkin_6 | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0310 | 348 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0310 | 348 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 149 | - | - | |
Clacu11g0310 | 348 | Pfam | Protein kinase domain | 73 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu07g1422 | Clacu-Chr7:28995356 | Clacu11g0310 | Clacu-Chr11:2793512 | 4.20E-53 | dispersed | |
Clacu10g1380 | Clacu-Chr10:26905831 | Clacu11g0310 | Clacu-Chr11:2793512 | 3.30E-57 | dispersed | |
Clacu11g0310 | Clacu-Chr11:2793512 | Clacu11g0348 | Clacu-Chr11:3146577 | 2.90E-112 | dispersed | |
Clacu02g1692 | Clacu-Chr2:30397643 | Clacu11g0310 | Clacu-Chr11:2793512 | 2.90E-30 | transposed | |
Clacu04g1097 | Clacu-Chr4:25222611 | Clacu11g0310 | Clacu-Chr11:2793512 | 7.40E-65 | transposed | |
Clacu09g0727 | Clacu-Chr9:6370679 | Clacu11g0310 | Clacu-Chr11:2793512 | 5.80E-32 | transposed | |
Clacu11g0310 | Clacu-Chr11:2793512 | Clacu03g1576 | Clacu-Chr3:29339844 | 2.10E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73938 | PF00069 | Pkinase | 6.30E-70 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0310 | K20603 | - | csv:101206374 | 633.254 |