Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0310 ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGACACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTATTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCATAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGCGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTCGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGCGAACTTCTGGTACATCCTTTCATCAAAAACAACCTTCTAATTTTTATTTGGAACAGGAGTCAGCCACAGGCTCTTCCACTTTGA 1047 41.64 MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLTQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKNNLLIFIWNRSQPQALPL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2793512 2796030 + ClG42_11g0031000.10 Clacu11g0310 261187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0310 348 FunFam Mitogen-activated protein kinase kinase 1 52 149 - -
Clacu11g0310 348 Gene3D Transferase(Phosphotransferase) domain 1 150 337 - -
Clacu11g0310 348 CDD PKc_MAPKK_plant_like 68 331 - -
Clacu11g0310 348 SUPERFAMILY Protein kinase-like (PK-like) 55 341 IPR011009 -
Clacu11g0310 348 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0310 348 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 46 331 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Clacu11g0310 348 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Clacu11g0310 348 FunFam mitogen-activated protein kinase kinase 3 150 334 - -
Clacu11g0310 348 SMART serkin_6 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0310 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0310 348 Gene3D Phosphorylase Kinase; domain 1 49 149 - -
Clacu11g0310 348 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1422 Clacu-Chr7:28995356 Clacu11g0310 Clacu-Chr11:2793512 4.20E-53 dispersed
Clacu10g1380 Clacu-Chr10:26905831 Clacu11g0310 Clacu-Chr11:2793512 3.30E-57 dispersed
Clacu11g0310 Clacu-Chr11:2793512 Clacu11g0348 Clacu-Chr11:3146577 2.90E-112 dispersed
Clacu02g1692 Clacu-Chr2:30397643 Clacu11g0310 Clacu-Chr11:2793512 2.90E-30 transposed
Clacu04g1097 Clacu-Chr4:25222611 Clacu11g0310 Clacu-Chr11:2793512 7.40E-65 transposed
Clacu09g0727 Clacu-Chr9:6370679 Clacu11g0310 Clacu-Chr11:2793512 5.80E-32 transposed
Clacu11g0310 Clacu-Chr11:2793512 Clacu03g1576 Clacu-Chr3:29339844 2.10E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73938 PF00069 Pkinase 6.30E-70 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0310 K20603 - csv:101206374 633.254