Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0311 ATGACATCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAAAAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTAGTTCTTTTGATATCTATGTTATATATAAGAGGAGAGTTATCACACGAACCGCTAGTACTGCTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTGAACTCTTTAAGCACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCAACAAATTTCTTCGACGAAGTTAATGTGATTGGCATCGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACACCTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGATGAGTTTCTGAAAGAGGTTGAAATTCTAAGTCAGATACGACATCCGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATAGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACCGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTGGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA 2187 43.48 MTSVAVAVNGVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKKKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTASSFDIYVIYKRRVITRTASTAPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGIGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYIDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDVSPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2797434 2800926 - ClG42_11g0031100.10 Clacu11g0311 261188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0311 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0311 728 ProSitePatterns Protein kinases ATP-binding region signature. 377 398 IPR017441 GO:0005524(InterPro)
Clacu11g0311 728 Coils Coil 258 278 - -
Clacu11g0311 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 724 IPR013083 -
Clacu11g0311 728 FunFam Os07g0541700 protein 444 534 - -
Clacu11g0311 728 ProSiteProfiles U-box domain profile. 653 726 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu11g0311 728 Gene3D Phosphorylase Kinase; domain 1 350 443 - -
Clacu11g0311 728 Gene3D HUPs 2 160 IPR014729 -
Clacu11g0311 728 Pfam Universal stress protein family 18 152 IPR006016 -
Clacu11g0311 728 PANTHER OS02G0152300 PROTEIN 4 716 IPR051348 -
Clacu11g0311 728 Pfam Protein kinase domain 373 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0311 728 CDD STK_N 3 162 - -
Clacu11g0311 728 Gene3D Transferase(Phosphotransferase) domain 1 444 651 - -
Clacu11g0311 728 ProSiteProfiles Protein kinase domain profile. 371 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0311 728 MobiDBLite consensus disorder prediction 200 224 - -
Clacu11g0311 728 CDD RING-Ubox_WDSUB1-like 655 709 - -
Clacu11g0311 728 SMART Ubox_2 657 719 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu11g0311 728 Pfam U-box domain 655 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu11g0311 728 Coils Coil 297 343 - -
Clacu11g0311 728 SUPERFAMILY Protein kinase-like (PK-like) 354 627 IPR011009 -
Clacu11g0311 728 SMART serkin_6 371 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0311 728 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 142 - -
Clacu11g0311 728 SUPERFAMILY RING/U-box 645 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0311 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0471 Clacu-Chr1:4689018 Clacu11g0311 Clacu-Chr11:2797434 6.10E-127 dispersed
Clacu05g0176 Clacu-Chr5:1621548 Clacu11g0311 Clacu-Chr11:2797434 7.10E-91 dispersed
Clacu11g0311 Clacu-Chr11:2797434 Clacu11g1321 Clacu-Chr11:22504247 4.00E-103 dispersed
Clacu06g1838 Clacu-Chr6:28922222 Clacu11g0311 Clacu-Chr11:2797434 4.00E-07 transposed
Clacu11g0311 Clacu-Chr11:2797434 Clacu09g0085 Clacu-Chr9:773867 2.50E-113 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1529 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Clacu02g1283 . 335 979 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Clacu08g1877 . 1 780 U-box Gene Family AT1G24330 59.5 3.5e-243 838.2
Clacu11g1569 . 1 755 U-box Gene Family AT1G24330 58.3 2.6e-230 795.4
Clacu08g1877 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Clacu11g1569 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Clacu01g2318 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Clacu07g0205 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Clacu07g0636 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Clacu01g0615 . 1073 1272 U-box Gene Family AT1G71020 55.9 2.9e-54 209.9
Clacu03g0161 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Clacu05g2310 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Clacu02g2083 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Clacu07g0636 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Clacu01g0615 . 859 1462 U-box Gene Family AT1G23030 52.4 8.3e-86 315.1
Clacu03g0161 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Clacu02g2083 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Clacu03g0161 . 24 689 U-box Gene Family AT3G46510 68.2 3.4e-170 595.5
Clacu02g2083 . 3 638 U-box Gene Family AT3G46510 66.3 5.6e-157 551.6
Clacu05g2310 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Clacu02g1019 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Clacu05g2310 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Clacu02g2083 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Clacu03g0161 . 31 650 U-box Gene Family AT3G54850 55.9 1.8e-104 377.1
Clacu02g1019 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Clacu04g0698 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Clacu03g0744 . 1 713 U-box Gene Family AT1G29340 67.9 1.4e-246 849.4
Clacu05g1286 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Clacu04g0556 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Clacu10g1808 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Clacu10g1808 . 1 403 U-box Gene Family AT2G35930 55.6 4.5e-120 428.3
Clacu04g0556 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Clacu05g1171 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Clacu05g1171 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Clacu01g1622 . 1 407 U-box Gene Family AT5G64660 54.2 2.4e-121 432.6
Clacu01g1622 . 1 407 U-box Gene Family AT5G09800 51.3 6.3e-106 381.3
Clacu08g1825 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Clacu05g2866 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Clacu08g1825 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Clacu05g2866 . 1 454 U-box Gene Family AT5G65920 61.3 2.7e-147 518.8
Clacu05g0176 . 1 872 U-box Gene Family AT2G45910 53.0 3.8e-235 811.6
Clacu11g0311 . 4 725 U-box Gene Family AT2G19410 50.1 2.2e-208 722.6
Clacu01g0471 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Clacu06g1777 . 1 478 U-box Gene Family AT5G65200 50.1 2.8e-88 323.2
Clacu09g1914 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Clacu06g1777 . 27 477 U-box Gene Family AT5G40140 51.5 2.0e-59 227.3
Clacu01g1482 . 29 498 U-box Gene Family AT5G40140 52.1 2.7e-56 216.9
Clacu08g1090 . 26 834 U-box Gene Family AT1G76390 61.2 5.1e-269 924.1
Clacu08g1090 . 35 834 U-box Gene Family AT1G20780 61.7 2.1e-278 955.3
Clacu08g1877 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Clacu11g1569 . 1 767 U-box Gene Family AT1G27910 62.4 4.0e-263 904.4
Clacu01g1826 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Clacu05g0243 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Clacu10g1853 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Clacu05g0448 . 1 517 U-box Gene Family AT1G04510 74.2 6.8e-222 766.9
Clacu05g0448 . 1 486 U-box Gene Family AT2G33340 73.4 6.1e-209 723.8
Clacu07g0204 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Clacu10g1529 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Clacu02g1283 . 335 979 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Clacu08g1877 . 1 780 U-box Gene Family AT1G24330 59.5 3.5e-243 838.2
Clacu11g1569 . 1 755 U-box Gene Family AT1G24330 58.3 2.6e-230 795.4
Clacu08g1877 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Clacu11g1569 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Clacu01g2318 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Clacu07g0205 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Clacu07g0636 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Clacu01g0615 . 1073 1272 U-box Gene Family AT1G71020 55.9 2.9e-54 209.9
Clacu03g0161 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Clacu05g2310 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Clacu02g2083 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Clacu07g0636 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Clacu01g0615 . 859 1462 U-box Gene Family AT1G23030 52.4 8.3e-86 315.1
Clacu03g0161 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Clacu02g2083 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Clacu03g0161 . 24 689 U-box Gene Family AT3G46510 68.2 3.4e-170 595.5
Clacu02g2083 . 3 638 U-box Gene Family AT3G46510 66.3 5.6e-157 551.6
Clacu05g2310 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Clacu02g1019 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Clacu05g2310 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Clacu02g2083 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Clacu03g0161 . 31 650 U-box Gene Family AT3G54850 55.9 1.8e-104 377.1
Clacu02g1019 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Clacu04g0698 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Clacu03g0744 . 1 713 U-box Gene Family AT1G29340 67.9 1.4e-246 849.4
Clacu05g1286 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Clacu04g0556 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Clacu10g1808 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Clacu10g1808 . 1 403 U-box Gene Family AT2G35930 55.6 4.5e-120 428.3
Clacu04g0556 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Clacu05g1171 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Clacu05g1171 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Clacu01g1622 . 1 407 U-box Gene Family AT5G64660 54.2 2.4e-121 432.6
Clacu01g1622 . 1 407 U-box Gene Family AT5G09800 51.3 6.3e-106 381.3
Clacu08g1825 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Clacu05g2866 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Clacu08g1825 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Clacu05g2866 . 1 454 U-box Gene Family AT5G65920 61.3 2.7e-147 518.8
Clacu05g0176 . 1 872 U-box Gene Family AT2G45910 53.0 3.8e-235 811.6
Clacu11g0311 . 4 725 U-box Gene Family AT2G19410 50.1 2.2e-208 722.6
Clacu01g0471 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Clacu06g1777 . 1 478 U-box Gene Family AT5G65200 50.1 2.8e-88 323.2
Clacu09g1914 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Clacu06g1777 . 27 477 U-box Gene Family AT5G40140 51.5 2.0e-59 227.3
Clacu01g1482 . 29 498 U-box Gene Family AT5G40140 52.1 2.7e-56 216.9
Clacu08g1090 . 26 834 U-box Gene Family AT1G76390 61.2 5.1e-269 924.1
Clacu08g1090 . 35 834 U-box Gene Family AT1G20780 61.7 2.1e-278 955.3
Clacu08g1877 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Clacu11g1569 . 1 767 U-box Gene Family AT1G27910 62.4 4.0e-263 904.4
Clacu01g1826 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Clacu05g0243 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Clacu10g1853 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Clacu05g0448 . 1 517 U-box Gene Family AT1G04510 74.2 6.8e-222 766.9
Clacu05g0448 . 1 486 U-box Gene Family AT2G33340 73.4 6.1e-209 723.8
Clacu07g0204 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73939 PF00069 Pkinase 6.50E-41 CL0016 Clacu PK