Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0311 | ATGACATCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAAAAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTAGTTCTTTTGATATCTATGTTATATATAAGAGGAGAGTTATCACACGAACCGCTAGTACTGCTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTGAACTCTTTAAGCACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCAACAAATTTCTTCGACGAAGTTAATGTGATTGGCATCGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACACCTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGATGAGTTTCTGAAAGAGGTTGAAATTCTAAGTCAGATACGACATCCGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATAGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACCGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTGGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA | 2187 | 43.48 | MTSVAVAVNGVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKKKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTASSFDIYVIYKRRVITRTASTAPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGIGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYIDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDVSPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS | 728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2797434 | 2800926 | - | ClG42_11g0031100.10 | Clacu11g0311 | 261188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0311 | 728 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 489 | 501 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0311 | 728 | ProSitePatterns | Protein kinases ATP-binding region signature. | 377 | 398 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0311 | 728 | Coils | Coil | 258 | 278 | - | - | |
Clacu11g0311 | 728 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 653 | 724 | IPR013083 | - | |
Clacu11g0311 | 728 | FunFam | Os07g0541700 protein | 444 | 534 | - | - | |
Clacu11g0311 | 728 | ProSiteProfiles | U-box domain profile. | 653 | 726 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu11g0311 | 728 | Gene3D | Phosphorylase Kinase; domain 1 | 350 | 443 | - | - | |
Clacu11g0311 | 728 | Gene3D | HUPs | 2 | 160 | IPR014729 | - | |
Clacu11g0311 | 728 | Pfam | Universal stress protein family | 18 | 152 | IPR006016 | - | |
Clacu11g0311 | 728 | PANTHER | OS02G0152300 PROTEIN | 4 | 716 | IPR051348 | - | |
Clacu11g0311 | 728 | Pfam | Protein kinase domain | 373 | 627 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0311 | 728 | CDD | STK_N | 3 | 162 | - | - | |
Clacu11g0311 | 728 | Gene3D | Transferase(Phosphotransferase) domain 1 | 444 | 651 | - | - | |
Clacu11g0311 | 728 | ProSiteProfiles | Protein kinase domain profile. | 371 | 634 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0311 | 728 | MobiDBLite | consensus disorder prediction | 200 | 224 | - | - | |
Clacu11g0311 | 728 | CDD | RING-Ubox_WDSUB1-like | 655 | 709 | - | - | |
Clacu11g0311 | 728 | SMART | Ubox_2 | 657 | 719 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu11g0311 | 728 | Pfam | U-box domain | 655 | 720 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu11g0311 | 728 | Coils | Coil | 297 | 343 | - | - | |
Clacu11g0311 | 728 | SUPERFAMILY | Protein kinase-like (PK-like) | 354 | 627 | IPR011009 | - | |
Clacu11g0311 | 728 | SMART | serkin_6 | 371 | 634 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0311 | 728 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 16 | 142 | - | - | |
Clacu11g0311 | 728 | SUPERFAMILY | RING/U-box | 645 | 722 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0471 | Clacu-Chr1:4689018 | Clacu11g0311 | Clacu-Chr11:2797434 | 6.10E-127 | dispersed | |
Clacu05g0176 | Clacu-Chr5:1621548 | Clacu11g0311 | Clacu-Chr11:2797434 | 7.10E-91 | dispersed | |
Clacu11g0311 | Clacu-Chr11:2797434 | Clacu11g1321 | Clacu-Chr11:22504247 | 4.00E-103 | dispersed | |
Clacu06g1838 | Clacu-Chr6:28922222 | Clacu11g0311 | Clacu-Chr11:2797434 | 4.00E-07 | transposed | |
Clacu11g0311 | Clacu-Chr11:2797434 | Clacu09g0085 | Clacu-Chr9:773867 | 2.50E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73939 | PF00069 | Pkinase | 6.50E-41 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0311 | - | - | - | 0.0 |