Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0335 | ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAAGTCGGGAGTTGGATTCTCCGGTGGATGCATACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTTCTCAAGTAA | 1194 | 51.93 | MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSSRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3007710 | 3008903 | - | ClG42_11g0033500.10 | Clacu11g0335 | 261212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0335 | 397 | Gene3D | - | 103 | 165 | - | - | |
Clacu11g0335 | 397 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872(InterPro) | |
Clacu11g0335 | 397 | FunFam | Zinc finger CCCH domain-containing protein 66 | 97 | 165 | - | - | |
Clacu11g0335 | 397 | PANTHER | UNKEMPT FAMILY MEMBER | 55 | 397 | IPR045234 | - | |
Clacu11g0335 | 397 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872(InterPro) | |
Clacu11g0335 | 397 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872(InterPro) | |
Clacu11g0335 | 397 | SUPERFAMILY | CCCH zinc finger | 138 | 168 | IPR036855 | GO:0046872(InterPro) | |
Clacu11g0335 | 397 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g1927 | Clacu-Chr5:28503474 | Clacu11g0335 | Clacu-Chr11:3007710 | 4.70E-86 | dispersed | |
Clacu07g0241 | Clacu-Chr7:2814102 | Clacu11g0335 | Clacu-Chr11:3007710 | 3.80E-57 | dispersed | |
Clacu07g1701 | Clacu-Chr7:31784821 | Clacu11g0335 | Clacu-Chr11:3007710 | 3.80E-46 | dispersed | |
Clacu08g1842 | Clacu-Chr8:27719004 | Clacu11g0335 | Clacu-Chr11:3007710 | 8.40E-63 | dispersed | |
Clacu10g1697 | Clacu-Chr10:30470450 | Clacu11g0335 | Clacu-Chr11:3007710 | 1.30E-50 | dispersed | |
Clacu11g0335 | Clacu-Chr11:3007710 | Clacu03g1629 | Clacu-Chr3:29942078 | 3.10E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48603 | None | None | None | None | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0335 | - | - | - | 0.0 |