Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0335 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAAGTCGGGAGTTGGATTCTCCGGTGGATGCATACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTTCTCAAGTAA 1194 51.93 MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSSRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3007710 3008903 - ClG42_11g0033500.10 Clacu11g0335 261212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0335 397 Gene3D - 103 165 - -
Clacu11g0335 397 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872(InterPro)
Clacu11g0335 397 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Clacu11g0335 397 PANTHER UNKEMPT FAMILY MEMBER 55 397 IPR045234 -
Clacu11g0335 397 SMART c3hfinal6 139 165 IPR000571 GO:0046872(InterPro)
Clacu11g0335 397 SMART c3hfinal6 174 197 IPR000571 GO:0046872(InterPro)
Clacu11g0335 397 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872(InterPro)
Clacu11g0335 397 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1927 Clacu-Chr5:28503474 Clacu11g0335 Clacu-Chr11:3007710 4.70E-86 dispersed
Clacu07g0241 Clacu-Chr7:2814102 Clacu11g0335 Clacu-Chr11:3007710 3.80E-57 dispersed
Clacu07g1701 Clacu-Chr7:31784821 Clacu11g0335 Clacu-Chr11:3007710 3.80E-46 dispersed
Clacu08g1842 Clacu-Chr8:27719004 Clacu11g0335 Clacu-Chr11:3007710 8.40E-63 dispersed
Clacu10g1697 Clacu-Chr10:30470450 Clacu11g0335 Clacu-Chr11:3007710 1.30E-50 dispersed
Clacu11g0335 Clacu-Chr11:3007710 Clacu03g1629 Clacu-Chr3:29942078 3.10E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48603 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0335 - - - 0.0