Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0347 | ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGTGATTACCTTGTCGATCAGGGTCTGTAG | 402 | 49.25 | MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL | 133 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3143179 | 3144672 | + | ClG42_11g0034700.10 | Clacu11g0347 | 261224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0347 | 133 | PANTHER | PROFILIN | 1 | 132 | IPR005455 | GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 29 | 42 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 73 | 82 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 119 | 132 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 54 | 68 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 106 | 119 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Plant profilin signature | 86 | 101 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | FunFam | Profilin | 1 | 133 | - | - | |
Clacu11g0347 | 133 | SMART | prof_2 | 1 | 133 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 132 | IPR036140 | - | |
Clacu11g0347 | 133 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 133 | - | - | |
Clacu11g0347 | 133 | Pfam | Profilin | 1 | 132 | IPR048278 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | CDD | PROF | 2 | 132 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Profilin signature | 42 | 62 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Profilin signature | 66 | 80 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Profilin signature | 102 | 115 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Profilin signature | 115 | 132 | IPR005455 | GO:0003779(InterPro) | |
Clacu11g0347 | 133 | PRINTS | Profilin signature | 23 | 32 | IPR005455 | GO:0003779(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu09g0029 | Clacu-Chr9:366032 | Clacu11g0347 | Clacu-Chr11:3143179 | 3.10E-61 | dispersed | |
Clacu11g0347 | Clacu-Chr11:3143179 | Clacu11g1685 | Clacu-Chr11:28089125 | 7.30E-56 | dispersed | |
Clacu11g0347 | Clacu-Chr11:3143179 | Clacu11g0348 | Clacu-Chr11:3146577 | 2.50E-48 | tandem | |
Clacu11g0347 | Clacu-Chr11:3143179 | Clacu07g1338 | Clacu-Chr7:28238065 | 1.70E-60 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0347 | K05759 | - | csv:101219322 | 260.381 |