Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0347 ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGTGATTACCTTGTCGATCAGGGTCTGTAG 402 49.25 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3143179 3144672 + ClG42_11g0034700.10 Clacu11g0347 261224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0347 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Clacu11g0347 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 FunFam Profilin 1 133 - -
Clacu11g0347 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Clacu11g0347 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Clacu11g0347 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Clacu11g0347 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Clacu11g0347 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0029 Clacu-Chr9:366032 Clacu11g0347 Clacu-Chr11:3143179 3.10E-61 dispersed
Clacu11g0347 Clacu-Chr11:3143179 Clacu11g1685 Clacu-Chr11:28089125 7.30E-56 dispersed
Clacu11g0347 Clacu-Chr11:3143179 Clacu11g0348 Clacu-Chr11:3146577 2.50E-48 tandem
Clacu11g0347 Clacu-Chr11:3143179 Clacu07g1338 Clacu-Chr7:28238065 1.70E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0347 K05759 - csv:101219322 260.381