Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0348 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGAAAATTTTCTAGTACTACAATTTTTCATACTTCCATTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTACTCGCTAGTGTATGGGCTTGTGGGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATTAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTTAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGATCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCCAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTCTAGTTTTCTTCCATAGGAATCTCGATTCCTTATCACTTCCATTTTTCCAATTCGATTCCAATTGCTTACACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 2301 41.2 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAENFLVLQFFILPLLLATKLVHYFLLASVWACGMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIQKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFLVFFHRNLDSLSLPFFQFDSNCLHMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVSKRNNRLFDSHS 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3146577 3159201 + ClG42_11g0034800.10 Clacu11g0348 261225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0348 766 Pfam Profilin 1 116 IPR048278 GO:0003779(InterPro)
Clacu11g0348 766 Gene3D Transferase(Phosphotransferase) domain 1 338 531 - -
Clacu11g0348 766 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 211 533 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Clacu11g0348 766 ProSiteProfiles Protein kinase domain profile. 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 Gene3D Phosphorylase Kinase; domain 1 226 336 - -
Clacu11g0348 766 ProSitePatterns Protein kinases ATP-binding region signature. 263 286 IPR017441 GO:0005524(InterPro)
Clacu11g0348 766 Pfam Protein kinase domain 258 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 SUPERFAMILY Profilin (actin-binding protein) 2 125 IPR036140 -
Clacu11g0348 766 FunFam Mitogen-activated protein kinase kinase 6 338 536 - -
Clacu11g0348 766 Gene3D Dynein light chain 2a, cytoplasmic 2 127 - -
Clacu11g0348 766 FunFam Profilin 1 130 - -
Clacu11g0348 766 FunFam Mitogen-activated protein kinase kinase 6 227 336 - -
Clacu11g0348 766 MobiDBLite consensus disorder prediction 746 766 - -
Clacu11g0348 766 SMART serkin_6 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 CDD PKc_MAPKK_plant_like 255 521 - -
Clacu11g0348 766 CDD PROF 2 112 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 SUPERFAMILY Protein kinase-like (PK-like) 255 518 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0348 K04368 - - csv:101218848 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1576 Clacu-Chr3:29339844 Clacu11g0348 Clacu-Chr11:3146577 1.70E-124 dispersed
Clacu08g1361 Clacu-Chr8:23666888 Clacu11g0348 Clacu-Chr11:3146577 1.50E-07 dispersed
Clacu08g1415 Clacu-Chr8:24226261 Clacu11g0348 Clacu-Chr11:3146577 1.60E-06 dispersed
Clacu09g0727 Clacu-Chr9:6370679 Clacu11g0348 Clacu-Chr11:3146577 1.10E-30 dispersed
Clacu11g0310 Clacu-Chr11:2793512 Clacu11g0348 Clacu-Chr11:3146577 2.90E-112 dispersed
Clacu11g0348 Clacu-Chr11:3146577 Clacu11g1685 Clacu-Chr11:28089125 5.50E-47 dispersed
Clacu11g0347 Clacu-Chr11:3143179 Clacu11g0348 Clacu-Chr11:3146577 2.50E-48 tandem
Clacu05g1731 Clacu-Chr5:26222276 Clacu11g0348 Clacu-Chr11:3146577 4.30E-07 transposed
Clacu07g1422 Clacu-Chr7:28995356 Clacu11g0348 Clacu-Chr11:3146577 3.50E-55 transposed
Clacu08g1137 Clacu-Chr8:21383432 Clacu11g0348 Clacu-Chr11:3146577 3.40E-08 transposed
Clacu10g1380 Clacu-Chr10:26905831 Clacu11g0348 Clacu-Chr11:3146577 3.30E-65 transposed
Clacu11g0348 Clacu-Chr11:3146577 Clacu03g1644 Clacu-Chr3:30074582 1.60E-22 wgd
Clacu11g0348 Clacu-Chr11:3146577 Clacu07g1336 Clacu-Chr7:28228028 4.00E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g255 . . . . Bpe01g00566 . . Bma11g00544 Cmo10g00705 Cmo11g00669 . . . . Sed08g0828 Cpe04g01087 Cpe18g00393 Bhi02g01946 Tan09g1197 Cmetu02g1395 . Hepe09g0826 . . Cla11g00184 Cam11g0214 Cec11g0215 Cco11g0228 Clacu11g0348 Cmu11g0198 Cre11g0697 . . . . Lsi06g00228 Csa02g00083 . Cme02g00193 Blo08g00323 Blo14g00525 Bda02g00408 Bda09g01123 . . . . Sed01g1248 . . Cma10g00677 Cma11g00657 Car10g00610 Car11g00540 . . Bhi06g01690 Tan08g0110 Cmetu05g0946 . Hepe08g2629 . . Cla03g01541 Cam03g1620 Cec03g1662 Cco03g1662 Clacu03g1644 Cmu03g2197 Cre03g1872 Lsi11g00219 Csa01g02876 Chy02g01171 Cme05g02011
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.9e-215 742.7
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.2e-213 736.1
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.2e-213 736.1
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.7e-209 723.8
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.7e-209 723.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT2G19760 73.3 5.2e-54 207.2
Clacu11g0348 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT4G29350 71.0 8.3e-52 199.9
Clacu11g0348 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Clacu11g0348 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Clacu11g0348 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.2e-43 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73941 PF00069 Pkinase 1.10E-65 CL0016 Clacu PK