Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0348 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGAAAATTTTCTAGTACTACAATTTTTCATACTTCCATTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTACTCGCTAGTGTATGGGCTTGTGGGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATTAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTTAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGATCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCCAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTCTAGTTTTCTTCCATAGGAATCTCGATTCCTTATCACTTCCATTTTTCCAATTCGATTCCAATTGCTTACACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 2301 41.2 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAENFLVLQFFILPLLLATKLVHYFLLASVWACGMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIQKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFLVFFHRNLDSLSLPFFQFDSNCLHMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVSKRNNRLFDSHS 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3146577 3159201 + ClG42_11g0034800.10 Clacu11g0348 261225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0348 766 Pfam Profilin 1 116 IPR048278 GO:0003779(InterPro)
Clacu11g0348 766 Gene3D Transferase(Phosphotransferase) domain 1 338 531 - -
Clacu11g0348 766 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 211 533 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Clacu11g0348 766 ProSiteProfiles Protein kinase domain profile. 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 Gene3D Phosphorylase Kinase; domain 1 226 336 - -
Clacu11g0348 766 ProSitePatterns Protein kinases ATP-binding region signature. 263 286 IPR017441 GO:0005524(InterPro)
Clacu11g0348 766 Pfam Protein kinase domain 258 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 SUPERFAMILY Profilin (actin-binding protein) 2 125 IPR036140 -
Clacu11g0348 766 FunFam Mitogen-activated protein kinase kinase 6 338 536 - -
Clacu11g0348 766 Gene3D Dynein light chain 2a, cytoplasmic 2 127 - -
Clacu11g0348 766 FunFam Profilin 1 130 - -
Clacu11g0348 766 FunFam Mitogen-activated protein kinase kinase 6 227 336 - -
Clacu11g0348 766 MobiDBLite consensus disorder prediction 746 766 - -
Clacu11g0348 766 SMART serkin_6 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 CDD PKc_MAPKK_plant_like 255 521 - -
Clacu11g0348 766 CDD PROF 2 112 IPR005455 GO:0003779(InterPro)
Clacu11g0348 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0348 766 SUPERFAMILY Protein kinase-like (PK-like) 255 518 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1576 Clacu-Chr3:29339844 Clacu11g0348 Clacu-Chr11:3146577 1.70E-124 dispersed
Clacu08g1361 Clacu-Chr8:23666888 Clacu11g0348 Clacu-Chr11:3146577 1.50E-07 dispersed
Clacu08g1415 Clacu-Chr8:24226261 Clacu11g0348 Clacu-Chr11:3146577 1.60E-06 dispersed
Clacu09g0727 Clacu-Chr9:6370679 Clacu11g0348 Clacu-Chr11:3146577 1.10E-30 dispersed
Clacu11g0310 Clacu-Chr11:2793512 Clacu11g0348 Clacu-Chr11:3146577 2.90E-112 dispersed
Clacu11g0348 Clacu-Chr11:3146577 Clacu11g1685 Clacu-Chr11:28089125 5.50E-47 dispersed
Clacu11g0347 Clacu-Chr11:3143179 Clacu11g0348 Clacu-Chr11:3146577 2.50E-48 tandem
Clacu05g1731 Clacu-Chr5:26222276 Clacu11g0348 Clacu-Chr11:3146577 4.30E-07 transposed
Clacu07g1422 Clacu-Chr7:28995356 Clacu11g0348 Clacu-Chr11:3146577 3.50E-55 transposed
Clacu08g1137 Clacu-Chr8:21383432 Clacu11g0348 Clacu-Chr11:3146577 3.40E-08 transposed
Clacu10g1380 Clacu-Chr10:26905831 Clacu11g0348 Clacu-Chr11:3146577 3.30E-65 transposed
Clacu11g0348 Clacu-Chr11:3146577 Clacu03g1644 Clacu-Chr3:30074582 1.60E-22 wgd
Clacu11g0348 Clacu-Chr11:3146577 Clacu07g1336 Clacu-Chr7:28228028 4.00E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73941 PF00069 Pkinase 1.10E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0348 K04368 - csv:101218848 674.855