Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0366 ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCTCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATGTAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 759 55.73 MADATVPETDSGGSSNSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQCSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3329865 3330623 - ClG42_11g0036600.10 Clacu11g0366 261243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0366 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 200 IPR051032 -
Clacu11g0366 252 MobiDBLite consensus disorder prediction 141 175 - -
Clacu11g0366 252 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677(InterPro)
Clacu11g0366 252 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 Pfam AP2 domain 54 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Clacu11g0366 252 CDD AP2 54 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 Coils Coil 217 237 - -
Clacu11g0366 252 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 MobiDBLite consensus disorder prediction 143 160 - -
Clacu11g0366 252 MobiDBLite consensus disorder prediction 1 59 - -
Clacu11g0366 252 SMART rav1_2 55 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0366 252 MobiDBLite consensus disorder prediction 8 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0111 Clacu-Chr8:2251829 Clacu11g0366 Clacu-Chr11:3329865 8.40E-27 dispersed
Clacu08g1380 Clacu-Chr8:23857461 Clacu11g0366 Clacu-Chr11:3329865 4.20E-40 dispersed
Clacu11g0366 Clacu-Chr11:3329865 Clacu11g1698 Clacu-Chr11:28226066 4.80E-40 dispersed
Clacu10g0247 Clacu-Chr10:3029928 Clacu11g0366 Clacu-Chr11:3329865 1.20E-37 transposed
Clacu11g0366 Clacu-Chr11:3329865 Clacu06g0971 Clacu-Chr6:13365941 5.70E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48605 PF00847 AP2 7.40E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0366 K09286 - csv:101212945 337.035