Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g0376 | ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGATCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTTATCGTCGCTTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCTGGGCGGGGGCTTCCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCACAGAAATATGATCGTGCATAGGGATATGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAGGTGCCTGCTTCTCAGCCATCTACAATTTTTCCAGGAACAGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAGGAACAAGAACCAATTAGCAAAGAAGAATATTTTAGAGTTTTAGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTCAAAGGTTCATCATATTCTTACGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACCTCATGTGTTGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTACGGTTTGGAGATCGACTTATGGGCATTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATCTTCACTACTCTAGGCAACTTGACTGAAGATTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGTTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCTGAGCTACATGTTCCTACGACAAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACAATGAGTTGGATTCTGATATGGATGAATTCGGCCCCATGAATGTTACCACCACTGCCACTGGTTACTCCATTCAATTTGATTGA | 1449 | 46.1 | MEPSSAKSWSIHTRPDIIQKYEILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLPAGELKRWMIQILSGLDACHRNMIVHRDMKPSNLLISDDGVLKLADFGQARILMEPEYVESNEISQPCEMNSSDQVPASQPSTIFPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWALGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFQIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPTTKTGQDEDSPAGWYDYNELDSDMDEFGPMNVTTTATGYSIQFD | 482 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3441762 | 3443721 | + | ClG42_11g0037600.10 | Clacu11g0376 | 261253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g0376 | 482 | FunFam | Cyclin-dependent kinase F-1 | 12 | 106 | - | - | |
| Clacu11g0376 | 482 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 442 | IPR011009 | - | |
| Clacu11g0376 | 482 | MobiDBLite | consensus disorder prediction | 188 | 223 | - | - | |
| Clacu11g0376 | 482 | SMART | serkin_6 | 21 | 423 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Clacu11g0376 | 482 | ProSiteProfiles | Protein kinase domain profile. | 21 | 423 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Clacu11g0376 | 482 | Pfam | Protein kinase domain | 292 | 423 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Clacu11g0376 | 482 | Pfam | Protein kinase domain | 21 | 179 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Clacu11g0376 | 482 | PANTHER | CELL DIVISION PROTEIN KINASE | 20 | 423 | IPR050108 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER) | |
| Clacu11g0376 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 114 | 203 | - | - | |
| Clacu11g0376 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 270 | 434 | - | - | |
| Clacu11g0376 | 482 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 111 | - | - | |
| Clacu11g0376 | 482 | MobiDBLite | consensus disorder prediction | 188 | 212 | - | - | |
| Clacu11g0376 | 482 | ProSitePatterns | Protein kinases ATP-binding region signature. | 27 | 50 | IPR017441 | GO:0005524(InterPro) | |
| Clacu11g0376 | 482 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu11g0376 | Clacu-Chr11:3441762 | Clacu11g1574 | Clacu-Chr11:26883467 | 8.90E-35 | dispersed | |
| Clacu11g0376 | Clacu-Chr11:3441762 | Clacu05g0668 | Clacu-Chr5:5621629 | 1.30E-33 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 73943 | PF00069 | Pkinase | 3.10E-32 | CL0016 | Clacu | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g0376 | - | - | - | 0.0 |