Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0376 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGATCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTTATCGTCGCTTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCTGGGCGGGGGCTTCCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCACAGAAATATGATCGTGCATAGGGATATGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAGGTGCCTGCTTCTCAGCCATCTACAATTTTTCCAGGAACAGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAGGAACAAGAACCAATTAGCAAAGAAGAATATTTTAGAGTTTTAGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTCAAAGGTTCATCATATTCTTACGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACCTCATGTGTTGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTACGGTTTGGAGATCGACTTATGGGCATTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATCTTCACTACTCTAGGCAACTTGACTGAAGATTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGTTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCTGAGCTACATGTTCCTACGACAAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACAATGAGTTGGATTCTGATATGGATGAATTCGGCCCCATGAATGTTACCACCACTGCCACTGGTTACTCCATTCAATTTGATTGA 1449 46.1 MEPSSAKSWSIHTRPDIIQKYEILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLPAGELKRWMIQILSGLDACHRNMIVHRDMKPSNLLISDDGVLKLADFGQARILMEPEYVESNEISQPCEMNSSDQVPASQPSTIFPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWALGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFQIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPTTKTGQDEDSPAGWYDYNELDSDMDEFGPMNVTTTATGYSIQFD 482
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 3441762 3443721 + ClG42_11g0037600.10 Clacu11g0376 261253
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0376 482 FunFam Cyclin-dependent kinase F-1 12 106 - -
Clacu11g0376 482 SUPERFAMILY Protein kinase-like (PK-like) 7 442 IPR011009 -
Clacu11g0376 482 MobiDBLite consensus disorder prediction 188 223 - -
Clacu11g0376 482 SMART serkin_6 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 Pfam Protein kinase domain 292 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 Pfam Protein kinase domain 21 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 PANTHER CELL DIVISION PROTEIN KINASE 20 423 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
Clacu11g0376 482 Gene3D Transferase(Phosphotransferase) domain 1 114 203 - -
Clacu11g0376 482 Gene3D Transferase(Phosphotransferase) domain 1 270 434 - -
Clacu11g0376 482 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Clacu11g0376 482 MobiDBLite consensus disorder prediction 188 212 - -
Clacu11g0376 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
Clacu11g0376 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0376 Clacu-Chr11:3441762 Clacu11g1574 Clacu-Chr11:26883467 8.90E-35 dispersed
Clacu11g0376 Clacu-Chr11:3441762 Clacu05g0668 Clacu-Chr5:5621629 1.30E-33 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73943 PF00069 Pkinase 3.10E-32 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0376 - - - 0.0