Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0376 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGATCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTTATCGTCGCTTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCTGGGCGGGGGCTTCCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCACAGAAATATGATCGTGCATAGGGATATGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAGGTGCCTGCTTCTCAGCCATCTACAATTTTTCCAGGAACAGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAGGAACAAGAACCAATTAGCAAAGAAGAATATTTTAGAGTTTTAGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTCAAAGGTTCATCATATTCTTACGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACCTCATGTGTTGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTACGGTTTGGAGATCGACTTATGGGCATTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATCTTCACTACTCTAGGCAACTTGACTGAAGATTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGTTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCTGAGCTACATGTTCCTACGACAAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACAATGAGTTGGATTCTGATATGGATGAATTCGGCCCCATGAATGTTACCACCACTGCCACTGGTTACTCCATTCAATTTGATTGA 1449 46.1 MEPSSAKSWSIHTRPDIIQKYEILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLPAGELKRWMIQILSGLDACHRNMIVHRDMKPSNLLISDDGVLKLADFGQARILMEPEYVESNEISQPCEMNSSDQVPASQPSTIFPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWALGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFQIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPTTKTGQDEDSPAGWYDYNELDSDMDEFGPMNVTTTATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3441762 3443721 + ClG42_11g0037600.10 Clacu11g0376 261253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0376 482 FunFam Cyclin-dependent kinase F-1 12 106 - -
Clacu11g0376 482 SUPERFAMILY Protein kinase-like (PK-like) 7 442 IPR011009 -
Clacu11g0376 482 MobiDBLite consensus disorder prediction 188 223 - -
Clacu11g0376 482 SMART serkin_6 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 Pfam Protein kinase domain 292 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 Pfam Protein kinase domain 21 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0376 482 PANTHER CELL DIVISION PROTEIN KINASE 20 423 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
Clacu11g0376 482 Gene3D Transferase(Phosphotransferase) domain 1 114 203 - -
Clacu11g0376 482 Gene3D Transferase(Phosphotransferase) domain 1 270 434 - -
Clacu11g0376 482 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Clacu11g0376 482 MobiDBLite consensus disorder prediction 188 212 - -
Clacu11g0376 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
Clacu11g0376 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0376 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0376 Clacu-Chr11:3441762 Clacu11g1574 Clacu-Chr11:26883467 8.90E-35 dispersed
Clacu11g0376 Clacu-Chr11:3441762 Clacu05g0668 Clacu-Chr5:5621629 1.30E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2358 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.7 2.1e-151 531.9
Clacu04g0659 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.4e-96 347.1
Clacu11g2083 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.4e-93 338.6
Clacu04g0659 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Clacu11g2083 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Clacu05g2358 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.7e-92 336.3
Clacu04g0659 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.6e-123 438.3
Clacu11g2083 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Clacu11g2083 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Clacu04g0659 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.3e-118 420.2
Clacu05g2358 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.4e-94 340.5
Clacu11g2083 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.5e-160 560.8
Clacu04g0659 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Clacu05g2358 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.4e-97 351.3
Clacu02g2462 . 57 604 Core Cell Cycle Gene Families AT5G10270 71.2 5.9e-215 743.8
Clacu10g1399 . 20 481 Core Cell Cycle Gene Families AT5G10270 77.3 2.2e-209 725.3
Clacu03g1683 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Clacu05g1093 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Clacu05g0668 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.8e-97 352.4
Clacu08g0080 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 6.6e-97 351.7
Clacu03g0394 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 8.6e-97 351.3
Clacu11g0205 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.3e-96 349.0
Clacu02g1804 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.0 3.1e-94 342.8
Clacu02g1673 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 5.2e-94 342.0
Clacu04g1264 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Clacu02g1803 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 1.9e-91 333.6
Clacu02g2462 . 154 603 Core Cell Cycle Gene Families AT5G64960 72.9 3.7e-179 624.8
Clacu10g1399 . 84 534 Core Cell Cycle Gene Families AT5G64960 70.9 2.5e-172 602.1
Clacu05g1093 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Clacu03g0394 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 3.5e-81 299.3
Clacu03g1683 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 7.9e-81 298.1
Clacu02g1804 . 247 509 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Clacu11g0205 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Clacu02g1803 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 3.9e-80 295.8
Clacu05g0668 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Clacu08g0080 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 3.9e-80 295.8
Clacu06g1552 . 8 414 Core Cell Cycle Gene Families AT1G73690 74.7 6.4e-172 600.5
Clacu06g1552 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.1e-155 545.4
Clacu06g1552 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 3.9e-174 607.8
Clacu04g0155 . 32 478 Core Cell Cycle Gene Families AT5G63610 78.9 7.0e-202 700.3
Clacu11g0376 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 2.0e-175 612.5
Clacu08g0740 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.8 2.6e-145 512.3
Clacu09g0236 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.3e-88 323.9
Clacu05g1869 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 5.8e-84 308.5
Clacu05g2234 . 300 579 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Clacu08g1785 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.6e-78 290.4
Clacu08g1445 . 286 547 Core Cell Cycle Gene Families AT1G44110 53.4 1.3e-75 280.8
Clacu09g0236 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.0e-77 286.2
Clacu05g1869 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.4 4.7e-75 278.9
Clacu05g2234 . 305 577 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Clacu08g1445 . 286 543 Core Cell Cycle Gene Families AT1G77390 50.8 9.6e-68 254.6
Clacu05g1869 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.7 9.1e-119 424.1
Clacu08g1445 . 119 559 Core Cell Cycle Gene Families AT5G25380 51.6 1.2e-102 370.5
Clacu09g0236 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 5.6e-100 361.7
Clacu08g0740 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 4.4e-81 298.9
Clacu05g2234 . 304 572 Core Cell Cycle Gene Families AT5G25380 52.0 2.8e-75 279.6
Clacu02g0700 . 119 343 Core Cell Cycle Gene Families AT5G25380 52.2 7.4e-60 228.4
Clacu05g1869 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.6 5.6e-94 341.7
Clacu08g0740 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Clacu05g2234 . 300 516 Core Cell Cycle Gene Families AT5G11300 55.3 7.3e-62 235.0
Clacu08g1785 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Clacu02g0700 . 119 285 Core Cell Cycle Gene Families AT5G11300 52.4 2.6e-43 173.3
Clacu09g0236 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 2.7e-118 422.5
Clacu08g0740 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.4e-81 299.3
Clacu05g2234 . 288 569 Core Cell Cycle Gene Families AT1G15570 51.4 2.1e-78 290.0
Clacu02g0700 . 119 347 Core Cell Cycle Gene Families AT1G15570 51.3 4.8e-59 225.7
Clacu09g0236 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 2.5e-119 426.0
Clacu08g0740 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.6e-81 300.4
Clacu05g2234 . 300 577 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Clacu08g1785 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Clacu02g0700 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.9 1.9e-58 223.8
Clacu08g1785 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 8.3e-115 410.6
Clacu05g2234 . 204 580 Core Cell Cycle Gene Families AT5G43080 57.0 5.0e-112 401.4
Clacu08g0740 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 2.5e-79 292.7
Clacu05g1869 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Clacu09g0236 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 5.8e-76 281.6
Clacu08g1445 . 283 561 Core Cell Cycle Gene Families AT5G43080 50.4 1.6e-73 273.5
Clacu08g1785 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 4.6e-124 441.4
Clacu05g2234 . 204 580 Core Cell Cycle Gene Families AT1G47210 53.7 3.1e-112 402.1
Clacu09g0236 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 7.3e-77 284.6
Clacu05g1869 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Clacu08g1445 . 283 549 Core Cell Cycle Gene Families AT1G47210 50.6 6.0e-71 265.0
Clacu05g2234 . 300 581 Core Cell Cycle Gene Families AT1G47220 59.2 4.0e-95 345.1
Clacu08g1785 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.4e-93 337.8
Clacu05g1869 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 6.2e-72 268.1
Clacu05g2234 . 204 580 Core Cell Cycle Gene Families AT1G47230 56.3 5.1e-115 411.4
Clacu08g1785 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.1e-114 410.2
Clacu02g0700 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.8 3.8e-78 288.9
Clacu08g0740 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.2e-76 283.9
Clacu09g0236 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.3e-73 273.9
Clacu05g1869 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Clacu04g0627 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.1e-116 414.1
Clacu04g0627 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 6.8e-82 301.2
Clacu02g2308 . 845 1047 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Clacu01g2155 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.0e-45 181.0
Clacu04g0627 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.8e-105 378.6
Clacu01g2155 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 6.8e-62 235.0
Clacu02g2308 . 756 1154 Core Cell Cycle Gene Families AT2G26760 53.3 2.4e-107 386.0
Clacu01g2155 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.7e-128 454.9
Clacu11g2051 . 167 566 Core Cell Cycle Gene Families AT2G17620 52.2 7.3e-105 377.9
Clacu01g2155 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.1e-103 372.9
Clacu11g2051 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 1.3e-89 327.0
Clacu02g2308 . 880 1106 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Clacu11g2051 . 131 566 Core Cell Cycle Gene Families AT1G20610 63.1 1.1e-142 503.4
Clacu01g2155 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 2.9e-122 435.6
Clacu11g2051 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.8 1.7e-104 376.3
Clacu01g2155 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 6.8e-82 301.2
Clacu02g2308 . 876 1043 Core Cell Cycle Gene Families AT1G76310 52.4 5.9e-41 165.2
Clacu09g2091 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Clacu05g2703 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.4e-105 378.3
Clacu01g1915 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 3.9e-83 305.4
Clacu05g1182 . 14 336 Core Cell Cycle Gene Families AT4G34160 52.4 6.0e-79 291.6
Clacu02g0668 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 1.5e-61 233.8
Clacu05g2220 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 5.3e-65 245.4
Clacu01g1915 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Clacu08g1308 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.3e-61 231.5
Clacu01g1915 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.2e-56 214.2
Clacu08g1308 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.2e-51 197.2
Clacu01g1718 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.1 4.3e-104 374.8
Clacu01g1450 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.3e-44 172.9
Clacu02g2221 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Clacu01g1450 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Clacu02g2221 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Clacu05g2898 . 300 1318 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.7
Clacu09g0604 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 1.2e-159 560.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007745 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73943 PF00069 Pkinase 3.10E-32 CL0016 Clacu PK