Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0384 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTCCGCCACCATCGACTCCAACGCAACCTCCGCCGTCCACTACACCACCACCAACAACCACTCCGTCACCGCCTCCGCCTTCCGCTGCAACGCCGCCCACTCCTTCTCGGCCCCCGCCGACTTCCGCGCCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAACCCGCCCCGCCCACTGCATCTCCCTCGCCGCCGGCTTCCACCCCTCCGCCGTCCAGGCCTTCGACTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGTCTCCTCCAACTGGCCGTAGTCCGCCGCCACCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGTCGTCGTCGTCGTCCTCCTCCTCTTCTAATATTTCAACTGGACTTGTTGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGCGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGGTCCTCTACCGCCTGATCCTTTAATCGGGACGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACTGGCGTTCGTCCTCCACCTCAACCGCTCTATATGAGTAGCAGTGGAGGTTCGGGTTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCCGAAGTTGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTAGAGTTCCATTTACATGGTAAAGGGCGGCCAACGATGGATTGGCAGACAAGACTTAAAATCGCATTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAGGCTGCTAACATATTGTTAGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTTGATATGAGTAATACTTCCATGGAAGATAGTCTTGTGGACTGGGCTAGACCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTTGATCCAAGGATGCAAAACAACTACAACCACAATGAGATGGCTCGCATGGTTGCCTGTGCTGCTGCTTGTGTTCGACATTCTGCTAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGCACAATGTACAGTTCTCATGGAAGCTCAGATTATGACACTCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGTACAGAATATGGAGCAAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGTCTGTATCCTTCGGGATCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAAGAAAGTGGAGGCTTCAGTGGACGCTCTTGA | 2022 | 51.48 | MSTPTPAPTSPPATNTTSPPPPTPSAPPPSTPTQPPPSTTPPPTTTPSPPPPSAATPPTPSRPPPTSAPPPATPSLPPPSTPQPAPPTASPSPPASTPPPSRPSTSPPPPSSTSPPSPPTGRSPPPPTSRTPSTPSRSPPPPSTSSSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNGPLPPDPLIGTVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS | 673 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3501975 | 3505247 | - | ClG42_11g0038400.10 | Clacu11g0384 | 261261 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 586 | 605 | - | - | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 1 | 142 | - | - | |
Clacu11g0384 | 673 | PRINTS | Proline rich extensin signature | 49 | 74 | - | - | |
Clacu11g0384 | 673 | PRINTS | Proline rich extensin signature | 4 | 20 | - | - | |
Clacu11g0384 | 673 | PRINTS | Proline rich extensin signature | 24 | 41 | - | - | |
Clacu11g0384 | 673 | FunFam | proline-rich receptor-like protein kinase PERK1 | 281 | 378 | - | - | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 582 | 607 | - | - | |
Clacu11g0384 | 673 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 128 | 620 | IPR047117 | - | |
Clacu11g0384 | 673 | SMART | serkin_6 | 303 | 539 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0384 | 673 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 379 | 587 | - | - | |
Clacu11g0384 | 673 | Pfam | Protein tyrosine and serine/threonine kinase | 308 | 576 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0384 | 673 | ProSiteProfiles | Protein kinase domain profile. | 303 | 582 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0384 | 673 | ProSitePatterns | Protein kinases ATP-binding region signature. | 309 | 331 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 627 | 655 | - | - | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 187 | 277 | - | - | |
Clacu11g0384 | 673 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 423 | 435 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 222 | 252 | - | - | |
Clacu11g0384 | 673 | Gene3D | Transferase(Phosphotransferase) domain 1 | 379 | 589 | - | - | |
Clacu11g0384 | 673 | Gene3D | Phosphorylase Kinase; domain 1 | 282 | 378 | - | - | |
Clacu11g0384 | 673 | SUPERFAMILY | Protein kinase-like (PK-like) | 278 | 576 | IPR011009 | - | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 626 | 673 | - | - | |
Clacu11g0384 | 673 | MobiDBLite | consensus disorder prediction | 1 | 155 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2733 | Clacu-Chr5:34834044 | Clacu11g0384 | Clacu-Chr11:3501975 | 3.30E-132 | dispersed | |
Clacu07g0911 | Clacu-Chr7:22836339 | Clacu11g0384 | Clacu-Chr11:3501975 | 1.00E-155 | dispersed | |
Clacu07g1249 | Clacu-Chr7:27309843 | Clacu11g0384 | Clacu-Chr11:3501975 | 1.70E-78 | dispersed | |
Clacu07g1364 | Clacu-Chr7:28461259 | Clacu11g0384 | Clacu-Chr11:3501975 | 1.60E-86 | dispersed | |
Clacu11g0384 | Clacu-Chr11:3501975 | Clacu11g0593 | Clacu-Chr11:5664796 | 6.60E-161 | dispersed | |
Clacu11g1918 | Clacu-Chr11:30185620 | Clacu11g0384 | Clacu-Chr11:3501975 | 1.50E-71 | dispersed | |
Clacu11g0384 | Clacu-Chr11:3501975 | Clacu05g0263 | Clacu-Chr5:2297527 | 3.00E-39 | wgd | |
Clacu11g0384 | Clacu-Chr11:3501975 | Clacu06g0921 | Clacu-Chr6:12329891 | 4.40E-197 | wgd | |
Clacu11g0384 | Clacu-Chr11:3501975 | Clacu09g0229 | Clacu-Chr9:2110013 | 1.40E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73944 | PF07714 | PK_Tyr_Ser-Thr | 7.90E-47 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0384 | - | - | - | 0.0 |