Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0384 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTCCGCCACCATCGACTCCAACGCAACCTCCGCCGTCCACTACACCACCACCAACAACCACTCCGTCACCGCCTCCGCCTTCCGCTGCAACGCCGCCCACTCCTTCTCGGCCCCCGCCGACTTCCGCGCCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAACCCGCCCCGCCCACTGCATCTCCCTCGCCGCCGGCTTCCACCCCTCCGCCGTCCAGGCCTTCGACTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGTCTCCTCCAACTGGCCGTAGTCCGCCGCCACCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGTCGTCGTCGTCGTCCTCCTCCTCTTCTAATATTTCAACTGGACTTGTTGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGCGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGGTCCTCTACCGCCTGATCCTTTAATCGGGACGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACTGGCGTTCGTCCTCCACCTCAACCGCTCTATATGAGTAGCAGTGGAGGTTCGGGTTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCCGAAGTTGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTAGAGTTCCATTTACATGGTAAAGGGCGGCCAACGATGGATTGGCAGACAAGACTTAAAATCGCATTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAGGCTGCTAACATATTGTTAGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTTGATATGAGTAATACTTCCATGGAAGATAGTCTTGTGGACTGGGCTAGACCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTTGATCCAAGGATGCAAAACAACTACAACCACAATGAGATGGCTCGCATGGTTGCCTGTGCTGCTGCTTGTGTTCGACATTCTGCTAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGCACAATGTACAGTTCTCATGGAAGCTCAGATTATGACACTCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGTACAGAATATGGAGCAAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGTCTGTATCCTTCGGGATCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAAGAAAGTGGAGGCTTCAGTGGACGCTCTTGA 2022 51.48 MSTPTPAPTSPPATNTTSPPPPTPSAPPPSTPTQPPPSTTPPPTTTPSPPPPSAATPPTPSRPPPTSAPPPATPSLPPPSTPQPAPPTASPSPPASTPPPSRPSTSPPPPSSTSPPSPPTGRSPPPPTSRTPSTPSRSPPPPSTSSSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNGPLPPDPLIGTVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3501975 3505247 - ClG42_11g0038400.10 Clacu11g0384 261261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0384 673 MobiDBLite consensus disorder prediction 586 605 - -
Clacu11g0384 673 MobiDBLite consensus disorder prediction 1 142 - -
Clacu11g0384 673 PRINTS Proline rich extensin signature 49 74 - -
Clacu11g0384 673 PRINTS Proline rich extensin signature 4 20 - -
Clacu11g0384 673 PRINTS Proline rich extensin signature 24 41 - -
Clacu11g0384 673 FunFam proline-rich receptor-like protein kinase PERK1 281 378 - -
Clacu11g0384 673 MobiDBLite consensus disorder prediction 582 607 - -
Clacu11g0384 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 128 620 IPR047117 -
Clacu11g0384 673 SMART serkin_6 303 539 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0384 673 FunFam Proline-rich receptor-like protein kinase PERK1 379 587 - -
Clacu11g0384 673 Pfam Protein tyrosine and serine/threonine kinase 308 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0384 673 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0384 673 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Clacu11g0384 673 MobiDBLite consensus disorder prediction 627 655 - -
Clacu11g0384 673 MobiDBLite consensus disorder prediction 187 277 - -
Clacu11g0384 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0384 673 MobiDBLite consensus disorder prediction 222 252 - -
Clacu11g0384 673 Gene3D Transferase(Phosphotransferase) domain 1 379 589 - -
Clacu11g0384 673 Gene3D Phosphorylase Kinase; domain 1 282 378 - -
Clacu11g0384 673 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
Clacu11g0384 673 MobiDBLite consensus disorder prediction 626 673 - -
Clacu11g0384 673 MobiDBLite consensus disorder prediction 1 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2733 Clacu-Chr5:34834044 Clacu11g0384 Clacu-Chr11:3501975 3.30E-132 dispersed
Clacu07g0911 Clacu-Chr7:22836339 Clacu11g0384 Clacu-Chr11:3501975 1.00E-155 dispersed
Clacu07g1249 Clacu-Chr7:27309843 Clacu11g0384 Clacu-Chr11:3501975 1.70E-78 dispersed
Clacu07g1364 Clacu-Chr7:28461259 Clacu11g0384 Clacu-Chr11:3501975 1.60E-86 dispersed
Clacu11g0384 Clacu-Chr11:3501975 Clacu11g0593 Clacu-Chr11:5664796 6.60E-161 dispersed
Clacu11g1918 Clacu-Chr11:30185620 Clacu11g0384 Clacu-Chr11:3501975 1.50E-71 dispersed
Clacu11g0384 Clacu-Chr11:3501975 Clacu05g0263 Clacu-Chr5:2297527 3.00E-39 wgd
Clacu11g0384 Clacu-Chr11:3501975 Clacu06g0921 Clacu-Chr6:12329891 4.40E-197 wgd
Clacu11g0384 Clacu-Chr11:3501975 Clacu09g0229 Clacu-Chr9:2110013 1.40E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73944 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0384 - - - 0.0