Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0407 ATGGCTGCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTCTTCTGACTCGGTGGGTCGACTCGGAGCCGACTCAGGATCGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATACTTCTAATTCTGTCTGTAATTGGGTTGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTTCGTTTGCCTGGTGTTGGCCTTGTCGGACCGATTCCGGCCAATACAATCGGGAAATTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCCAACCGTCTCTCCGGCGAGATCCCATCGGATTTTTCCAATTTAGTAATGCTGCGGAATCTGTATCTTCAGGATAATGCTTTCGCCGGCGAGTTTCCGTCGAGTTTGACTCGTTTGACTCGGCTTACTCGGCTGGATTTGTCGTCGAACGAATTCTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACTCACTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAGTATCTCAGCCGTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGTTCGATTCCGAAATCATTGGCTAAATTCCCCACCTCCTCCTTCGCCGGGAACTTAGATCTCTGCGGCGGACCATTTCCACCCTGCAACCCATTCCCTCCCTCTCCATCTCCGTCACAAAACCCTTCACCAGCCCACAAAAAATCGAAGAAACTCTCCACAGCGGCGATAATCGGAATCATAATCGGCGCCGTTTTCGCAGCTTTTCTTCTCCTCCTCGTCCTCATCCTCTGCATTCGGCGGCGGTCCCGCGGACAACAGACGAAGTCAGCGAAGCCACCATCGGCGGTGGGAACGGCGGCTCGATCAATTCCAGTAGCAGAGGCCGGAACGTCGTCGTCGAAAGACGACATTACCGGAGGATCAGTGGAGGCGACGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAACTTCGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTACTAGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAAGAATTCGAAACTCAAATGGAAATTTTAGGGAAAATTAAACATGAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAAAAACTGCTTGTTTATGATTACATCTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGCTCCGGCAGGACGCCGTTGGACTGGGATTCAAGAATGAGAATAGCTCTAAGCGCCGGCAGGGGATTAGCGCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATCCTTCTCCGCCCGGATCACGACGCCTGCATCTCCGATTTCGGCCTAAACCCACTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACCGGGCGCCGGAGGTCGTCGAAACCCGAAAAGTCACATTCAAATCCGACGTTTACAGCTACGGCGTTCTCCTCCTTGAGCTCCTGACCGGGAAAGCCCCGAACCAGCAATCCCTCGGCGAGGAGGGAATCGACCTTCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTCCATAACATTGAAGAAGAGATGGTTCAATTACTGCAGATCGCAATGTCCTGCGTTTCGACGGTTCCCGATCAGCGGCCGGCCATGCCGGAAGTTGTACGGATGATCGAAGATATGAACAGTCATAGAAGTGAGACCGATGACGGGTTGCGCCAGTCTTCCGATGACCCTTCGAAAGGATCGGATGTGAACACGCCGCCGGCGGAATCTAGAACTCCGCCGAGAGTGACGCCGTAG 1959 52.99 MAAAISLCSVFLLLLLTRWVDSEPTQDRQALLDFFSKTPHANRVQWNTSNSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFAGEFPSSLTRLTRLTRLDLSSNEFSGPIPPSVDNLTHLSGIFLQNNGFSGSLPSISAVNLTNFNVSNNKLNGSIPKSLAKFPTSSFAGNLDLCGGPFPPCNPFPPSPSPSQNPSPAHKKSKKLSTAAIIGIIIGAVFAAFLLLLVLILCIRRRSRGQQTKSAKPPSAVGTAARSIPVAEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSAGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3813284 3818064 + ClG42_11g0040700.10 Clacu11g0407 261284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0407 652 SUPERFAMILY L domain-like 25 207 - -
Clacu11g0407 652 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Clacu11g0407 652 Pfam Protein kinase domain 349 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0407 652 MobiDBLite consensus disorder prediction 303 317 - -
Clacu11g0407 652 MobiDBLite consensus disorder prediction 613 652 - -
Clacu11g0407 652 PANTHER OS05G0588300 PROTEIN 7 618 IPR050994 -
Clacu11g0407 652 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
Clacu11g0407 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0407 652 FunFam pollen receptor-like kinase 1 315 419 - -
Clacu11g0407 652 MobiDBLite consensus disorder prediction 284 318 - -
Clacu11g0407 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Clacu11g0407 652 MobiDBLite consensus disorder prediction 630 644 - -
Clacu11g0407 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Clacu11g0407 652 CDD STKc_IRAK 351 613 - -
Clacu11g0407 652 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Clacu11g0407 652 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Clacu11g0407 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Clacu11g0407 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 624 - -
Clacu11g0407 652 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Clacu11g0407 652 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Clacu11g0407 652 MobiDBLite consensus disorder prediction 613 629 - -
Clacu11g0407 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0680 Clacu-Chr4:20751540 Clacu11g0407 Clacu-Chr11:3813284 3.20E-137 dispersed
Clacu04g1104 Clacu-Chr4:25289006 Clacu11g0407 Clacu-Chr11:3813284 3.50E-130 dispersed
Clacu05g1017 Clacu-Chr5:8995384 Clacu11g0407 Clacu-Chr11:3813284 1.50E-120 dispersed
Clacu05g1292 Clacu-Chr5:13001832 Clacu11g0407 Clacu-Chr11:3813284 1.00E-123 dispersed
Clacu10g0927 Clacu-Chr10:19204721 Clacu11g0407 Clacu-Chr11:3813284 9.10E-72 dispersed
Clacu10g2204 Clacu-Chr10:35105597 Clacu11g0407 Clacu-Chr11:3813284 3.80E-73 dispersed
Clacu11g0283 Clacu-Chr11:2613618 Clacu11g0407 Clacu-Chr11:3813284 7.40E-66 dispersed
Clacu11g0407 Clacu-Chr11:3813284 Clacu11g1567 Clacu-Chr11:26797546 2.50E-48 dispersed
Clacu01g1768 Clacu-Chr1:29859142 Clacu11g0407 Clacu-Chr11:3813284 8.90E-70 transposed
Clacu02g1944 Clacu-Chr2:32996160 Clacu11g0407 Clacu-Chr11:3813284 4.60E-140 transposed
Clacu03g0622 Clacu-Chr3:6495858 Clacu11g0407 Clacu-Chr11:3813284 2.00E-47 transposed
Clacu07g0697 Clacu-Chr7:13972155 Clacu11g0407 Clacu-Chr11:3813284 1.50E-77 transposed
Clacu09g1925 Clacu-Chr9:34140494 Clacu11g0407 Clacu-Chr11:3813284 9.00E-64 transposed
Clacu10g1925 Clacu-Chr10:32873139 Clacu11g0407 Clacu-Chr11:3813284 5.10E-92 transposed
Clacu11g0407 Clacu-Chr11:3813284 Clacu06g1126 Clacu-Chr6:21347586 8.40E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73945 PF00069 Pkinase 4.80E-37 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0407 - - - 0.0