Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0441 | ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAAGAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGGAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA | 735 | 52.11 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDKNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4146823 | 4148235 | - | ClG42_11g0044100.10 | Clacu11g0441 | 261318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0441 | 244 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 138 | IPR050913 | - | |
Clacu11g0441 | 244 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | Coils | Coil | 197 | 217 | - | - | |
Clacu11g0441 | 244 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0441 | 244 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Clacu11g0441 | 244 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g1517 | Clacu-Chr8:25057042 | Clacu11g0441 | Clacu-Chr11:4146823 | 1.40E-25 | dispersed | |
Clacu09g0325 | Clacu-Chr9:2770688 | Clacu11g0441 | Clacu-Chr11:4146823 | 9.70E-25 | dispersed | |
Clacu11g0441 | Clacu-Chr11:4146823 | Clacu11g1719 | Clacu-Chr11:28458610 | 8.50E-18 | dispersed | |
Clacu11g0441 | Clacu-Chr11:4146823 | Clacu05g1844 | Clacu-Chr5:27697131 | 3.50E-56 | wgd | |
Clacu11g0441 | Clacu-Chr11:4146823 | Clacu05g0216 | Clacu-Chr5:1920020 | 1.10E-14 | wgd | |
Clacu11g0441 | Clacu-Chr11:4146823 | Clacu06g1202 | Clacu-Chr6:22624641 | 6.20E-61 | wgd | |
Clacu11g0441 | Clacu-Chr11:4146823 | Clacu07g1270 | Clacu-Chr7:27540030 | 7.40E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48612 | PF00847 | AP2 | 3.50E-12 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0441 | - | - | - | 0.0 |