Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0441 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAAGAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGGAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA 735 52.11 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDKNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4146823 4148235 - ClG42_11g0044100.10 Clacu11g0441 261318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0441 244 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 138 IPR050913 -
Clacu11g0441 244 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 Coils Coil 197 217 - -
Clacu11g0441 244 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0441 244 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Clacu11g0441 244 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1517 Clacu-Chr8:25057042 Clacu11g0441 Clacu-Chr11:4146823 1.40E-25 dispersed
Clacu09g0325 Clacu-Chr9:2770688 Clacu11g0441 Clacu-Chr11:4146823 9.70E-25 dispersed
Clacu11g0441 Clacu-Chr11:4146823 Clacu11g1719 Clacu-Chr11:28458610 8.50E-18 dispersed
Clacu11g0441 Clacu-Chr11:4146823 Clacu05g1844 Clacu-Chr5:27697131 3.50E-56 wgd
Clacu11g0441 Clacu-Chr11:4146823 Clacu05g0216 Clacu-Chr5:1920020 1.10E-14 wgd
Clacu11g0441 Clacu-Chr11:4146823 Clacu06g1202 Clacu-Chr6:22624641 6.20E-61 wgd
Clacu11g0441 Clacu-Chr11:4146823 Clacu07g1270 Clacu-Chr7:27540030 7.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48612 PF00847 AP2 3.50E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0441 - - - 0.0