Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g0446 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCACTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 579 | 43.35 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4204253 | 4207931 | - | ClG42_11g0044600.10 | Clacu11g0446 | 261323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g0446 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275(InterPro) | |
| Clacu11g0446 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
| Clacu11g0446 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 177 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| Clacu11g0446 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
| Clacu11g0446 | 192 | Gene3D | High mobility group box domain | 102 | 161 | IPR036910 | - | |
| Clacu11g0446 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu08g1948 | Clacu-Chr8:28467067 | Clacu11g0446 | Clacu-Chr11:4204253 | 8.90E-18 | dispersed | |
| Clacu10g0295 | Clacu-Chr10:3849611 | Clacu11g0446 | Clacu-Chr11:4204253 | 3.10E-39 | dispersed | |
| Clacu02g2303 | Clacu-Chr2:36101771 | Clacu11g0446 | Clacu-Chr11:4204253 | 5.70E-48 | transposed | |
| Clacu05g2577 | Clacu-Chr5:33676055 | Clacu11g0446 | Clacu-Chr11:4204253 | 1.30E-22 | transposed | |
| Clacu11g0446 | Clacu-Chr11:4204253 | Clacu06g1211 | Clacu-Chr6:22794077 | 6.20E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48613 | PF04690 | YABBY | 5.30E-71 | CL0114 | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g0446 | K25796 | - | csv:101219877 | 387.882 |