Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0446 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCACTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.35 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4204253 4207931 - ClG42_11g0044600.10 Clacu11g0446 261323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0446 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Clacu11g0446 192 CDD HMG-box_SF 120 156 - -
Clacu11g0446 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Clacu11g0446 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Clacu11g0446 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Clacu11g0446 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0446 K25796 - - csv:101219877 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1948 Clacu-Chr8:28467067 Clacu11g0446 Clacu-Chr11:4204253 8.90E-18 dispersed
Clacu10g0295 Clacu-Chr10:3849611 Clacu11g0446 Clacu-Chr11:4204253 3.10E-39 dispersed
Clacu02g2303 Clacu-Chr2:36101771 Clacu11g0446 Clacu-Chr11:4204253 5.70E-48 transposed
Clacu05g2577 Clacu-Chr5:33676055 Clacu11g0446 Clacu-Chr11:4204253 1.30E-22 transposed
Clacu11g0446 Clacu-Chr11:4204253 Clacu06g1211 Clacu-Chr6:22794077 6.20E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2577 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.2e-38 154.8
Clacu05g2559 . 16 152 C2C2-YABBY Transcription Factor Family AT1G69180 56.9 7.2e-38 154.1
Clacu01g0387 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Clacu02g2303 . 1 175 C2C2-YABBY Transcription Factor Family AT1G08465 65.5 1.5e-54 209.5
Clacu01g0387 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Clacu06g1211 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Clacu10g0295 . 22 192 C2C2-YABBY Transcription Factor Family AT1G08465 53.8 4.2e-41 164.9
Clacu11g0446 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.1e-41 164.1
Clacu01g0387 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Clacu10g0295 . 33 192 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 8.3e-38 154.1
Clacu05g2742 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Clacu06g1211 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Clacu11g0446 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.2e-61 231.1
Clacu02g2303 . 1 175 C2C2-YABBY Transcription Factor Family AT2G26580 58.9 1.4e-48 189.5
Clacu01g0387 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
Clacu10g0295 . 22 192 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 3.1e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48613 PF04690 YABBY 5.30E-71 CL0114 Clacu TF