Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0461 ATGGAGGAAAATGAAAACTGTGGCTGTTGGGCTGTCCTTAAACGCACCGTTTCAGATGTCTCCAAATCTTCCCCTTCTTCCAAACATTCCCCCAACTCCATTCCTCGCCTTACCTTACTTTACGATTCAGCTACCGAGACCCGATATTTAAACGCAAGCGACCGAGATTTGTGTGCGCCGGCCGAAGCTCGGCTATCCTTCGACAATGCTCCGCCGCTGCCGCCGACGAGGTTAGAGGACAAATTTAAACGCCAGTTACTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGAAATTTCCGGCCGGATAGCATTCTGGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCCAAACCTGGATCAGGAATCACAGTCGCCGTCAAAAGCTTGAAACCGGATGGTCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGGTACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCGGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGATACAGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCGCCAGAATATCTAATGACAGGGCATTTGACATCAAAGAGTGATGTCTATAGCTTCGGTGTTGTCCTACTCGAGATCTTAACGGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAAAACCTAGTGTCATGGGCTCGACCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAGGGGGTTCAAAAAGTCTCTCGACTAGCTTCTCACTGCATCAGTAGAGATCCAAAATCTCGTCCTACCATGGATGAAGTTGTCAAGGTTCTCATTCCACTACAAGATCTTAACGACCTTGCCATCCTAGCATATCATTCACGCCTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGACTACACCAGTTAACATACACCCAGTCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGTCGGTAA 1308 45.8 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLYDSATETRYLNASDRDLCAPAEARLSFDNAPPLPPTRLEDKFKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMDEVVKVLIPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4379198 4385623 - ClG42_11g0046100.10 Clacu11g0461 261338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0461 435 ProSitePatterns Protein kinases ATP-binding region signature. 107 139 IPR017441 GO:0005524(InterPro)
Clacu11g0461 435 FunFam Serine/threonine-protein kinase BIK1 73 186 - -
Clacu11g0461 435 CDD STKc_IRAK 107 383 - -
Clacu11g0461 435 PANTHER OS01G0588500 PROTEIN-RELATED 80 384 IPR050823 -
Clacu11g0461 435 FunFam Probable serine/threonine-protein kinase PBL8 187 400 - -
Clacu11g0461 435 Gene3D Transferase(Phosphotransferase) domain 1 187 395 - -
Clacu11g0461 435 ProSiteProfiles Protein kinase domain profile. 101 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0461 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0461 435 SUPERFAMILY Protein kinase-like (PK-like) 84 383 IPR011009 -
Clacu11g0461 435 Pfam Protein tyrosine and serine/threonine kinase 105 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0461 435 Gene3D Phosphorylase Kinase; domain 1 75 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1881 Clacu-Chr9:33654410 Clacu11g0461 Clacu-Chr11:4379198 6.30E-142 dispersed
Clacu09g2005 Clacu-Chr9:34892598 Clacu11g0461 Clacu-Chr11:4379198 2.20E-119 dispersed
Clacu09g2006 Clacu-Chr9:34903025 Clacu11g0461 Clacu-Chr11:4379198 4.60E-102 dispersed
Clacu10g0022 Clacu-Chr10:629215 Clacu11g0461 Clacu-Chr11:4379198 1.40E-97 dispersed
Clacu10g0210 Clacu-Chr10:2512025 Clacu11g0461 Clacu-Chr11:4379198 1.20E-82 dispersed
Clacu10g1812 Clacu-Chr10:31850453 Clacu11g0461 Clacu-Chr11:4379198 1.10E-61 dispersed
Clacu10g2236 Clacu-Chr10:35312590 Clacu11g0461 Clacu-Chr11:4379198 2.30E-55 dispersed
Clacu11g0461 Clacu-Chr11:4379198 Clacu11g1315 Clacu-Chr11:22418854 5.40E-108 dispersed
Clacu11g0461 Clacu-Chr11:4379198 Clacu05g0176 Clacu-Chr5:1621548 8.20E-47 wgd
Clacu11g0461 Clacu-Chr11:4379198 Clacu06g1227 Clacu-Chr6:23009561 1.10E-196 wgd
Clacu11g0461 Clacu-Chr11:4379198 Clacu08g1515 Clacu-Chr8:25034093 3.90E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73947 PF07714 PK_Tyr_Ser-Thr 8.60E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0461 - - - 0.0