Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g0466 | ATGGAACCTGCCGATTCCACCAATGGCGATGAAGAATCCATTATTACTCCCTTGCTTGCTCAGAAATCATTTGCCAATTCTTCCTCACAGGTCGCTATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGACTACGAGACTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGTTTGATTATGGGTCTTGTTGGATTTTTCAACAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTTTTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCACCTGGAATATTATCGCCTCGAACACTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCTATGATCGTCGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAAAATATTTGGCTTGACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCCTGGTGGAGAAGTGCCCTTCTGTGGCGATCATTTTTCACAACGGCTGTAGTTGCTGTGGTCTTACGCTCACTGATTGACCTTTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTCTCCCACATATCACCTCGAAGATCTACCTCCGGTGCTTGTTCTTGCTTTTATTGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTGAATAAGTTTCTTCGCATTTACAATCTCATACACGAGAAAGGTATTATTTACAAAATTTTACTGGCTTGCTCGGTCTCAATTTTCACATCCTTCCTTCTTTTTGGATTACCATGGTTCGCATCATGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACGATAGGTCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGGCACGGACTCCGAGTTTCAGTTATCGTCAATGCTCACATTTTTCGTTGCCTGTTTTTCCTTGAGTATTCTCAGTTATGGGACAGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCAGTCCGTACACAAACCTCAGCCATGGCTTCTTTGCGATATTAGGCGCTGCTTCATTTCTCGGGGGGTCAATGAGGACAACAGTGTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTAATAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTCACTGTTGCTGATGTGTTAACGAGTCCGCTTCAATTATTGCATGGCATTGAGAAGGTTTGTAACGTAATAAACATTCTCAGAATGACGAGCCATCACGGATTTCCTGTCATTGATGAACCTCCTTTCTCCGAAGTCCCTGTTTTATATGGTCTAATTCTCAGAGCCCATCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGGCCGTGCCAATACGTGGATCAGAAAGAGAAGATCTCTGTAAGCTATTCTCAGCTGATGATTTTGTAAAGATGGGTTCGGGTGACGTTGAAAGGGTTGAAGATGTACAATTGACCAATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTTGCAAATACTTCACCTTGTACCGTCTTGGAGACAATGTCACTCGCAAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATTGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTTAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAAAAAATTCTTCTAG | 2322 | 42.59 | MEPADSTNGDEESIITPLLAQKSFANSSSQVAIVGANVCPIESLDYETFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAVVAVVLRSLIDLCLNGLCGLFGKGGLIIFDTYSDSPTYHLEDLPPVLVLAFIGGILGSLYNFLLNKFLRIYNLIHEKGIIYKILLACSVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQLSSMLTFFVACFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVSPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVCNVINILRMTSHHGFPVIDEPPFSEVPVLYGLILRAHLIMLLKKKAFLAVPIRGSEREDLCKLFSADDFVKMGSGDVERVEDVQLTNEEMEMFIDLHPFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRLPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKKKFF | 773 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4456807 | 4461268 | - | ClG42_11g0046600.10 | Clacu11g0466 | 261343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g0466 | 773 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 575 | 745 | - | - | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 494 | 510 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 462 | 482 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 512 | 531 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 550 | 564 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | FunFam | Chloride channel ClC3 | 65 | 384 | - | - | |
| Clacu11g0466 | 773 | SUPERFAMILY | CBS-domain pair | 566 | 743 | IPR046342 | - | |
| Clacu11g0466 | 773 | ProSiteProfiles | CBS domain profile. | 693 | 753 | IPR000644 | - | |
| Clacu11g0466 | 773 | Pfam | CBS domain | 695 | 743 | IPR000644 | - | |
| Clacu11g0466 | 773 | Pfam | Voltage gated chloride channel | 130 | 544 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0466 | 773 | Gene3D | Clc chloride channel | 65 | 563 | - | - | |
| Clacu11g0466 | 773 | SUPERFAMILY | Clc chloride channel | 51 | 565 | IPR014743 | - | |
| Clacu11g0466 | 773 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 26 | 744 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Clacu11g0466 | 773 | Gene3D | - | 564 | 744 | IPR046342 | - | |
| Clacu11g0466 | 773 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Plant CLC chloride channel signature | 414 | 430 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0466 | 773 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu10g0717 | Clacu-Chr10:10129677 | Clacu11g0466 | Clacu-Chr11:4456807 | 1.70E-261 | dispersed | |
| Clacu11g0466 | Clacu-Chr11:4456807 | Clacu11g0851 | Clacu-Chr11:8607939 | 2.50E-217 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g0466 | K05016 | - | csv:101216071 | 1407.89 |