Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0484 ATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACGAGTCAAAGTGTTGAAGGTGCAAAAGGTTTTCCACCTGCAATCAGTACTGATAATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACATGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCAAATGCTACATTCTCGCCGTATCCCTCTCAAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATTAAATAGCTCATTAAATACCTTTGGGAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTCCACACACATTCAATGGTATTTCAACGTCATCGGATCACATCCAGTTGCATCGGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTTCGAGCCATTTGTTGATGTTACGAGGACAGAAGCAACAGATTCAAGGTGGTGGAGAATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCGTTAGCAAACGGCACAGGTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCGGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAATGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATGGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACAATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGAAGAATTTGGATTTGATGCCCAATCTCTCGGGTCGTCATGTATATGA 2097 41.25 MTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSVEGAKGFPPAISTDNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNMMGAFGGKQTSFRPMASLNGFSMTGTGRLSNATFSPYPSQEIVGQLNSTSGLSLHGIASSGMFQSHKLNSSLNTFGKSHPAFLLANQPPHTFNGISTSSDHIQLHRDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSNYDFGSSHLLMLRGQKQQIQGGGEFGGQSSLKVTLDNPEPLANGTGVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHSSIVRDSLVSGNSVVDPLNQMANQNNAICLENIGSSSTNQLNDGAPTFIHNGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINEEFGFDAQSLGSSCI 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4586300 4590261 - ClG42_11g0048400.10 Clacu11g0484 261361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0484 698 Gene3D - 206 272 - -
Clacu11g0484 698 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Clacu11g0484 698 CDD REC_typeB_ARR-like 26 140 - -
Clacu11g0484 698 FunFam Two-component response regulator 206 272 - -
Clacu11g0484 698 SUPERFAMILY CheY-like 23 150 IPR011006 -
Clacu11g0484 698 Gene3D - 24 175 - -
Clacu11g0484 698 PIRSF RR_ARR_type-B 7 698 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Clacu11g0484 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Clacu11g0484 698 MobiDBLite consensus disorder prediction 149 165 - -
Clacu11g0484 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 346 IPR045279 GO:0009736(InterPro)
Clacu11g0484 698 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Clacu11g0484 698 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677(InterPro)
Clacu11g0484 698 MobiDBLite consensus disorder prediction 141 215 - -
Clacu11g0484 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1268 Clacu-Chr4:26772822 Clacu11g0484 Clacu-Chr11:4586300 4.40E-15 dispersed
Clacu06g1305 Clacu-Chr6:23960247 Clacu11g0484 Clacu-Chr11:4586300 5.00E-156 dispersed
Clacu06g1428 Clacu-Chr6:25147823 Clacu11g0484 Clacu-Chr11:4586300 6.80E-46 dispersed
Clacu06g1430 Clacu-Chr6:25166425 Clacu11g0484 Clacu-Chr11:4586300 4.40E-49 dispersed
Clacu08g1900 Clacu-Chr8:28194833 Clacu11g0484 Clacu-Chr11:4586300 8.50E-64 dispersed
Clacu09g0545 Clacu-Chr9:4653005 Clacu11g0484 Clacu-Chr11:4586300 8.70E-19 dispersed
Clacu09g1265 Clacu-Chr9:13395901 Clacu11g0484 Clacu-Chr11:4586300 4.90E-20 dispersed
Clacu10g0195 Clacu-Chr10:2312610 Clacu11g0484 Clacu-Chr11:4586300 2.60E-17 dispersed
Clacu10g1634 Clacu-Chr10:29685614 Clacu11g0484 Clacu-Chr11:4586300 2.70E-15 dispersed
Clacu01g0009 Clacu-Chr1:153977 Clacu11g0484 Clacu-Chr11:4586300 7.60E-19 transposed
Clacu11g0484 Clacu-Chr11:4586300 Clacu05g1796 Clacu-Chr5:27168716 8.40E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48615 PF00072 Response_reg 1.60E-25 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0484 K14491 - csv:101203718 1201.42