Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0484 | ATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACGAGTCAAAGTGTTGAAGGTGCAAAAGGTTTTCCACCTGCAATCAGTACTGATAATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACATGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCAAATGCTACATTCTCGCCGTATCCCTCTCAAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATTAAATAGCTCATTAAATACCTTTGGGAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTCCACACACATTCAATGGTATTTCAACGTCATCGGATCACATCCAGTTGCATCGGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTTCGAGCCATTTGTTGATGTTACGAGGACAGAAGCAACAGATTCAAGGTGGTGGAGAATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCGTTAGCAAACGGCACAGGTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCGGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAATGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATGGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACAATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGAAGAATTTGGATTTGATGCCCAATCTCTCGGGTCGTCATGTATATGA | 2097 | 41.25 | MTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSVEGAKGFPPAISTDNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNMMGAFGGKQTSFRPMASLNGFSMTGTGRLSNATFSPYPSQEIVGQLNSTSGLSLHGIASSGMFQSHKLNSSLNTFGKSHPAFLLANQPPHTFNGISTSSDHIQLHRDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSNYDFGSSHLLMLRGQKQQIQGGGEFGGQSSLKVTLDNPEPLANGTGVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHSSIVRDSLVSGNSVVDPLNQMANQNNAICLENIGSSSTNQLNDGAPTFIHNGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINEEFGFDAQSLGSSCI | 698 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4586300 | 4590261 | - | ClG42_11g0048400.10 | Clacu11g0484 | 261361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0484 | 698 | Gene3D | - | 206 | 272 | - | - | |
Clacu11g0484 | 698 | SUPERFAMILY | Homeodomain-like | 208 | 270 | IPR009057 | - | |
Clacu11g0484 | 698 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Clacu11g0484 | 698 | FunFam | Two-component response regulator | 206 | 272 | - | - | |
Clacu11g0484 | 698 | SUPERFAMILY | CheY-like | 23 | 150 | IPR011006 | - | |
Clacu11g0484 | 698 | Gene3D | - | 24 | 175 | - | - | |
Clacu11g0484 | 698 | PIRSF | RR_ARR_type-B | 7 | 698 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Clacu11g0484 | 698 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Clacu11g0484 | 698 | MobiDBLite | consensus disorder prediction | 149 | 165 | - | - | |
Clacu11g0484 | 698 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 19 | 346 | IPR045279 | GO:0009736(InterPro) | |
Clacu11g0484 | 698 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Clacu11g0484 | 698 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 210 | 266 | IPR006447 | GO:0003677(InterPro) | |
Clacu11g0484 | 698 | MobiDBLite | consensus disorder prediction | 141 | 215 | - | - | |
Clacu11g0484 | 698 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g1268 | Clacu-Chr4:26772822 | Clacu11g0484 | Clacu-Chr11:4586300 | 4.40E-15 | dispersed | |
Clacu06g1305 | Clacu-Chr6:23960247 | Clacu11g0484 | Clacu-Chr11:4586300 | 5.00E-156 | dispersed | |
Clacu06g1428 | Clacu-Chr6:25147823 | Clacu11g0484 | Clacu-Chr11:4586300 | 6.80E-46 | dispersed | |
Clacu06g1430 | Clacu-Chr6:25166425 | Clacu11g0484 | Clacu-Chr11:4586300 | 4.40E-49 | dispersed | |
Clacu08g1900 | Clacu-Chr8:28194833 | Clacu11g0484 | Clacu-Chr11:4586300 | 8.50E-64 | dispersed | |
Clacu09g0545 | Clacu-Chr9:4653005 | Clacu11g0484 | Clacu-Chr11:4586300 | 8.70E-19 | dispersed | |
Clacu09g1265 | Clacu-Chr9:13395901 | Clacu11g0484 | Clacu-Chr11:4586300 | 4.90E-20 | dispersed | |
Clacu10g0195 | Clacu-Chr10:2312610 | Clacu11g0484 | Clacu-Chr11:4586300 | 2.60E-17 | dispersed | |
Clacu10g1634 | Clacu-Chr10:29685614 | Clacu11g0484 | Clacu-Chr11:4586300 | 2.70E-15 | dispersed | |
Clacu01g0009 | Clacu-Chr1:153977 | Clacu11g0484 | Clacu-Chr11:4586300 | 7.60E-19 | transposed | |
Clacu11g0484 | Clacu-Chr11:4586300 | Clacu05g1796 | Clacu-Chr5:27168716 | 8.40E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48615 | PF00072 | Response_reg | 1.60E-25 | CL0304 | Clacu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0484 | K14491 | - | csv:101203718 | 1201.42 |