Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0492 ATGGTTAGCAATTTCTCTTATAGAAAAGCTTTCATTGACTCCACAATCAAAATTGCAAGATTTTATGGGTTTGATGGGCTTGATTTTTGTTGGGTTTCAGCCAATTCAAGTTCTGACATGTCAAACATGGGGAAACTCTTTCAAGAATGGAGACAAGCTGCAGAAGTAGAAGCAAGAAGCTCAAAAAAACAAGTCTTGATTTTGACATCAGCAGTTCAATACAAGCCAGATTTGGAAAATGGGTCATCTTTTCCAGTGGATTCCATAAGGAATAATTTGAATTGGGTAAATATTTTGGCTTATGATTATTACATGCCAAATTGGGCAAATTTTACAGCTCCTTTTGCAGCTTTATATGATCCAAAATTAGGAGCAAATACAGATAGTGGAATTGGGAAATGGATTGAAAAAGGATTACCAGCTGCTAATATTCTTTTGGCTTTACCATTTTATGGATATGCTTGGAGGCTTAAAAATGTTGAGAATTTTGGTGTTGGGGCAGCAGCAATTGGGGCAGCAATTAATAATGATGGGTCAATTAGTTATAAGAATATAAAGGAATTTATGGAGAGAAATGGGGTTGATGAAGTGAAGTTTAATGGAAGTTATGTGATGAGTTATTGTGTGGTTGGATCTACTTGGATTGCTTTTGATGATGCTGAGGTTGTTAAAATTAAGGTTTCTTATGTTAAACAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTTATGATGACAATTGGGAGCTCTCTTCTGTTGCAGCAAGAGAGTTTGGCAATGAGAAAGAGAAGAAGGTATCATTGCTGATAATCATCCCAAGTACAATTGGTGCAGCCATATTATTACTACTACTAGGATTTTTGTTGTTTAGAAGACTCAAATCCAAAGGAAGAAGATCAAAATTCAATGTAAAAAATCTTGTTGGTGGAGAAGATTTTGGTAGCAATGCACCTGATTTGCAAGTTTTTAGCTTTGATGAGATTGAAAAAGCTACCAATAAGTTTGCTTTCATGAATAAACTTGGACAAGGTGGTTATGGTCCTGTTTATAAGGGTATACTACCAAATGGAAAGGAGATAGCAGTGAAAAGATTGTCAGAAACTTCAGGACAGGGTTTTGAGGAGTTTAAGAATGAAGTTTTGCTCACTGCAAGATTACAACATGTCAATCTTGTGAGAGTTCTTGGATTTTGTGTTGACACTCATCAACATATGTTGGTTTATGAGTACATGCCTAACAAAAGCTTGGACTTCCACCTATTTGGCCTTGGAAGAGGGAATTTGTTGAATTGGGCAAAAAGAGTGGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTACAAGAATACTCAAGATTGACAATCATTCATAGGGATTTGAAGCCTAGCAATATTTTGTTGGATGATGGAATGAAACCGAAAATCTCAGATTTTGGCATGGCTAGAATTTTTGCAAAAGATGAACTTGAAGCAAACACGAGTCGGATTGCGGGAACACATGGTTATATACCTCCTGAGTATGTGAGAAAAGGACTTTATTCTACGAAATCAGATGTATTTAGCTTCGGAGTTCTTCTTCTTCAAATCATAAGTGGCAAGAAGATTACTAAGTTGTATGGAGTGCATGAACATTTGAACCTTCTAGATTATGCATATGAGCTGTGGAAAGATGGCAAAGGAATGGAGTTTATGGATTCATCACTTGATGATTCTGATTCAACTTGCAAACTCACAAGATGCATGCAAATAGCTTTGCTTTGTGTCCAAGAAAATGCAGATGATAGGCCATCCATGTTGGAAATCTCTTCAATACTTAAAAATACAACTTCAGATATTAAAGCTCCACAAAGACCTGCTTTCTCTACAAAAGAAATTCAACATGAAACTGATGATCATACCCTTACCATTCAACAAGAAACTTACTCAATTTGTACTCCAACAGTTTCCGAATTTGCAGCTCGATGA 1971 36.33 MVSNFSYRKAFIDSTIKIARFYGFDGLDFCWVSANSSSDMSNMGKLFQEWRQAAEVEARSSKKQVLILTSAVQYKPDLENGSSFPVDSIRNNLNWVNILAYDYYMPNWANFTAPFAALYDPKLGANTDSGIGKWIEKGLPAANILLALPFYGYAWRLKNVENFGVGAAAIGAAINNDGSISYKNIKEFMERNGVDEVKFNGSYVMSYCVVGSTWIAFDDAEVVKIKVSYVKQRRLLGYFVWLVSYDDNWELSSVAAREFGNEKEKKVSLLIIIPSTIGAAILLLLLGFLLFRRLKSKGRRSKFNVKNLVGGEDFGSNAPDLQVFSFDEIEKATNKFAFMNKLGQGGYGPVYKGILPNGKEIAVKRLSETSGQGFEEFKNEVLLTARLQHVNLVRVLGFCVDTHQHMLVYEYMPNKSLDFHLFGLGRGNLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKDELEANTSRIAGTHGYIPPEYVRKGLYSTKSDVFSFGVLLLQIISGKKITKLYGVHEHLNLLDYAYELWKDGKGMEFMDSSLDDSDSTCKLTRCMQIALLCVQENADDRPSMLEISSILKNTTSDIKAPQRPAFSTKEIQHETDDHTLTIQQETYSICTPTVSEFAAR 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4654299 4660822 + ClG42_11g0049200.10 Clacu11g0492 261369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0492 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 412 615 - -
Clacu11g0492 656 Gene3D - 150 217 IPR029070 -
Clacu11g0492 656 Gene3D Glycosidases 1 248 - -
Clacu11g0492 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 301 411 - -
Clacu11g0492 656 SUPERFAMILY Protein kinase-like (PK-like) 319 631 IPR011009 -
Clacu11g0492 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0492 656 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 226 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu11g0492 656 SMART serkin_6 336 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0492 656 CDD STKc_IRAK 342 609 - -
Clacu11g0492 656 SUPERFAMILY Chitinase insertion domain 151 217 IPR029070 -
Clacu11g0492 656 SUPERFAMILY (Trans)glycosidases 1 262 IPR017853 -
Clacu11g0492 656 Pfam Glycosyl hydrolases family 18 1 246 IPR001223 GO:0005975(InterPro)
Clacu11g0492 656 Pfam Protein kinase domain 338 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0492 656 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 262 IPR001223 GO:0005975(InterPro)
Clacu11g0492 656 FunFam Class V chitinase CHIT5b 150 217 - -
Clacu11g0492 656 Gene3D Transferase(Phosphotransferase) domain 1 412 632 - -
Clacu11g0492 656 ProSiteProfiles Protein kinase domain profile. 336 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0492 656 SMART 2g34 1 246 IPR011583 GO:0008061(InterPro)
Clacu11g0492 656 Gene3D Phosphorylase Kinase; domain 1 312 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0489 Clacu-Chr11:4635718 Clacu11g0492 Clacu-Chr11:4654299 5.20E-40 dispersed
Clacu11g0492 Clacu-Chr11:4654299 Clacu09g0211 Clacu-Chr9:1938649 2.40E-99 dispersed
Clacu11g0490 Clacu-Chr11:4643156 Clacu11g0492 Clacu-Chr11:4654299 2.10E-44 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73948 PF00069 Pkinase 5.40E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0492 - - - 0.0