Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g0493 | ATGCAACAGAAATGGTGTCATCTGAGGAAGGAGAAAAGAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAGAGAGCAAATTCCTCAAGTTTTTGGGGTTCATGTGGAACCCCCTCTCATGGGTCATGGAATCTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGATTTAATCAGTATCAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGCGATCCTCTTAAGATCGATCAATCTGCTCTCACCGGCGAATCCTTACCGGTTACCAAGAACCCGGGCGACGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCACACCTTCTTTGGCAAGGCAGCTCATCTTGTTGATAGCACTAACCAAGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTCTAGGAATGCTCATTGAAATCATAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGCATTGATAACTTGCTGGTTCTTCTCATCGGTGGCATTCCAATTGCCATGCCGACAGTGTTGTCGGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAGCAAGGTGCTATTACCAAAAGAATGACATTGAAGAAATGGCAGGAATGGATGTGCTTTGTAGTGACAAAGACTCTCACCCTCAACAAGCTGACAGTGGACAAGAGTTTGATTGAAAATATCGACGCAGACACATTACTTCTGCTGGCTGCAAGAGCTTCAAGAGTTGAGAACCAAGATGCTATCAATGCTTCGATTGTCGGGATGTTGGGTGATCCAAAGGAGCGCACTGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAAGTAGCAAGGGTGCTCTGGAACAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGATCTTCGTTCTCTAGCCGTCGCTGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTCGTAGGCTCGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGACGGTGTTAAAGATGCCCCTGCACTCAAGAAGGCCGACATTGGAATTGCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAACTCTGATATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACCGATGTTGTTCTCAGAATGTACATGGCTATCATGACTGTGGTCTTCTTCTGGCTAACATATCAGACTGATTTCTTTCCAAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTCGTGACGCGATCAAGGAGTTGGTCCTTTGTAGAGCGCCCTGGTGTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTGTTGGCAACCGTCATCGCCGTGTATTCCAAATGGGACTTTGCTAGAATTCATGGCATTCGTTGGGGATGGGCAGGAACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATCAGCACAACGTACACTTCACGGCTTACAGAAACCAGAAGCGCTATTTAACGACACGAGTAGCTACCGAGAGCTTTCCAAGATCGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGGATGAGTCAGAATGTATAA | 2379 | 45.19 | MQQKWCHLRKEKRDFKSLALTNLKRKESKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVLTAIGNFCICSIALGMLIEIIVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTLKKWQEWMCFVVTKTLTLNKLTVDKSLIENIDADTLLLLAARASRVENQDAINASIVGMLGDPKERTAITYIDSNGNWHRSSKGALEQIIDLCDLKGEIRKKAHDIISNYADRDLRSLAVAEKTKESAGEPWDFVGLLPLFDPPRHDSAETIRQALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVKDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTTLIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATDVVLRMYMAIMTVVFFWLTYQTDFFPKTFGVKQISENLAELNSALYLQVSIISQALIFVTRSRSWSFVERPGVLLVGAFLIAQLLATVIAVYSKWDFARIHGIRWGWAGTAFTTKKDYGKGEREAQWASAQRTLHGLQKPEALFNDTSSYRELSKIAEQAKRRAEVARMSQNV | 792 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4662735 | 4666915 | + | ClG42_11g0049300.10 | Clacu11g0493 | 261370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g0493 | 792 | NCBIfam | HAD-IC family P-type ATPase | 497 | 568 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu11g0493 | 792 | NCBIfam | HAD-IC family P-type ATPase | 71 | 470 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu11g0493 | 792 | SUPERFAMILY | HAD-like | 415 | 568 | IPR036412 | - | |
| Clacu11g0493 | 792 | Pfam | E1-E2 ATPase | 101 | 272 | - | - | |
| Clacu11g0493 | 792 | PRINTS | P-type cation-transporting ATPase superfamily signature | 290 | 304 | - | - | |
| Clacu11g0493 | 792 | PRINTS | P-type cation-transporting ATPase superfamily signature | 417 | 428 | - | - | |
| Clacu11g0493 | 792 | PRINTS | P-type cation-transporting ATPase superfamily signature | 439 | 449 | - | - | |
| Clacu11g0493 | 792 | PRINTS | P-type cation-transporting ATPase superfamily signature | 545 | 557 | - | - | |
| Clacu11g0493 | 792 | PRINTS | P-type cation-transporting ATPase superfamily signature | 149 | 163 | - | - | |
| Clacu11g0493 | 792 | PRINTS | P-type cation-transporting ATPase superfamily signature | 522 | 541 | - | - | |
| Clacu11g0493 | 792 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 22 | 570 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Clacu11g0493 | 792 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 24 | 570 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Clacu11g0493 | 792 | SUPERFAMILY | Calcium ATPase, transduction domain A | 102 | 199 | IPR008250 | - | |
| Clacu11g0493 | 792 | Gene3D | - | 102 | 186 | - | - | |
| Clacu11g0493 | 792 | FunFam | Plasma membrane ATPase | 102 | 186 | - | - | |
| Clacu11g0493 | 792 | PRINTS | H+-transporting ATPase (proton pump) signature | 384 | 402 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu11g0493 | 792 | PRINTS | H+-transporting ATPase (proton pump) signature | 522 | 538 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu11g0493 | 792 | PRINTS | H+-transporting ATPase (proton pump) signature | 494 | 510 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu11g0493 | 792 | PRINTS | H+-transporting ATPase (proton pump) signature | 553 | 578 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu11g0493 | 792 | Gene3D | - | 302 | 422 | IPR023299 | GO:0000166(InterPro) | |
| Clacu11g0493 | 792 | Gene3D | - | 570 | 734 | - | - | |
| Clacu11g0493 | 792 | Pfam | haloacid dehalogenase-like hydrolase | 403 | 536 | - | - | |
| Clacu11g0493 | 792 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 296 | 428 | IPR023299 | GO:0000166(InterPro) | |
| Clacu11g0493 | 792 | Gene3D | - | 767 | 791 | - | - | |
| Clacu11g0493 | 792 | Gene3D | - | 287 | 559 | IPR023214 | - | |
| Clacu11g0493 | 792 | FunFam | Plasma membrane ATPase | 414 | 570 | - | - | |
| Clacu11g0493 | 792 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 24 | 730 | IPR023298 | - | |
| Clacu11g0493 | 792 | Gene3D | - | 64 | 569 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu11g0493 | Clacu-Chr11:4662735 | Clacu11g1388 | Clacu-Chr11:24399862 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g0493 | K01535 | - | csv:101211582 | 1308.12 |