Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0493 ATGCAACAGAAATGGTGTCATCTGAGGAAGGAGAAAAGAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAGAGAGCAAATTCCTCAAGTTTTTGGGGTTCATGTGGAACCCCCTCTCATGGGTCATGGAATCTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGATTTAATCAGTATCAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGCGATCCTCTTAAGATCGATCAATCTGCTCTCACCGGCGAATCCTTACCGGTTACCAAGAACCCGGGCGACGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCACACCTTCTTTGGCAAGGCAGCTCATCTTGTTGATAGCACTAACCAAGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTCTAGGAATGCTCATTGAAATCATAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGCATTGATAACTTGCTGGTTCTTCTCATCGGTGGCATTCCAATTGCCATGCCGACAGTGTTGTCGGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAGCAAGGTGCTATTACCAAAAGAATGACATTGAAGAAATGGCAGGAATGGATGTGCTTTGTAGTGACAAAGACTCTCACCCTCAACAAGCTGACAGTGGACAAGAGTTTGATTGAAAATATCGACGCAGACACATTACTTCTGCTGGCTGCAAGAGCTTCAAGAGTTGAGAACCAAGATGCTATCAATGCTTCGATTGTCGGGATGTTGGGTGATCCAAAGGAGCGCACTGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAAGTAGCAAGGGTGCTCTGGAACAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGATCTTCGTTCTCTAGCCGTCGCTGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTCGTAGGCTCGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGACGGTGTTAAAGATGCCCCTGCACTCAAGAAGGCCGACATTGGAATTGCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAACTCTGATATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACCGATGTTGTTCTCAGAATGTACATGGCTATCATGACTGTGGTCTTCTTCTGGCTAACATATCAGACTGATTTCTTTCCAAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTCGTGACGCGATCAAGGAGTTGGTCCTTTGTAGAGCGCCCTGGTGTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTGTTGGCAACCGTCATCGCCGTGTATTCCAAATGGGACTTTGCTAGAATTCATGGCATTCGTTGGGGATGGGCAGGAACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATCAGCACAACGTACACTTCACGGCTTACAGAAACCAGAAGCGCTATTTAACGACACGAGTAGCTACCGAGAGCTTTCCAAGATCGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGGATGAGTCAGAATGTATAA 2379 45.19 MQQKWCHLRKEKRDFKSLALTNLKRKESKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVLTAIGNFCICSIALGMLIEIIVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTLKKWQEWMCFVVTKTLTLNKLTVDKSLIENIDADTLLLLAARASRVENQDAINASIVGMLGDPKERTAITYIDSNGNWHRSSKGALEQIIDLCDLKGEIRKKAHDIISNYADRDLRSLAVAEKTKESAGEPWDFVGLLPLFDPPRHDSAETIRQALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVKDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTTLIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATDVVLRMYMAIMTVVFFWLTYQTDFFPKTFGVKQISENLAELNSALYLQVSIISQALIFVTRSRSWSFVERPGVLLVGAFLIAQLLATVIAVYSKWDFARIHGIRWGWAGTAFTTKKDYGKGEREAQWASAQRTLHGLQKPEALFNDTSSYRELSKIAEQAKRRAEVARMSQNV 792
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 4662735 4666915 + ClG42_11g0049300.10 Clacu11g0493 261370
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0493 792 NCBIfam HAD-IC family P-type ATPase 497 568 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g0493 792 NCBIfam HAD-IC family P-type ATPase 71 470 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g0493 792 SUPERFAMILY HAD-like 415 568 IPR036412 -
Clacu11g0493 792 Pfam E1-E2 ATPase 101 272 - -
Clacu11g0493 792 PRINTS P-type cation-transporting ATPase superfamily signature 290 304 - -
Clacu11g0493 792 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Clacu11g0493 792 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Clacu11g0493 792 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Clacu11g0493 792 PRINTS P-type cation-transporting ATPase superfamily signature 149 163 - -
Clacu11g0493 792 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Clacu11g0493 792 PANTHER CALCIUM-TRANSPORTING ATPASE 22 570 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Clacu11g0493 792 NCBIfam plasma-membrane proton-efflux P-type ATPase 24 570 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu11g0493 792 SUPERFAMILY Calcium ATPase, transduction domain A 102 199 IPR008250 -
Clacu11g0493 792 Gene3D - 102 186 - -
Clacu11g0493 792 FunFam Plasma membrane ATPase 102 186 - -
Clacu11g0493 792 PRINTS H+-transporting ATPase (proton pump) signature 384 402 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g0493 792 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g0493 792 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g0493 792 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g0493 792 Gene3D - 302 422 IPR023299 GO:0000166(InterPro)
Clacu11g0493 792 Gene3D - 570 734 - -
Clacu11g0493 792 Pfam haloacid dehalogenase-like hydrolase 403 536 - -
Clacu11g0493 792 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 296 428 IPR023299 GO:0000166(InterPro)
Clacu11g0493 792 Gene3D - 767 791 - -
Clacu11g0493 792 Gene3D - 287 559 IPR023214 -
Clacu11g0493 792 FunFam Plasma membrane ATPase 414 570 - -
Clacu11g0493 792 SUPERFAMILY Calcium ATPase, transmembrane domain M 24 730 IPR023298 -
Clacu11g0493 792 Gene3D - 64 569 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0493 Clacu-Chr11:4662735 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0493 K01535 - csv:101211582 1308.12