Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0527 ATGTCACCGGAGACGTCGAAAAGTCACAAGATCCGTCGCATTGTCCGCCTCCGGCAAATGCTACAACACTGGCGCAAGAAGGCACGTGCCGCGGCCAACAGAGCACCGCCAGCCGACGTTCCCGCCGGTCACGTCGCCGTATGCGTCGGTAGCGACTGCCGGCGATTCATCGTCCGCGCCACCTTCCTAAACCATCCGATCTTCCGTAAGTTACTCTCACAGGCCGAAGAAGAATACGGCTTCGAAACGCGAGGTCCTCTGGCTCTTCCGTGCGACGAATCGGTCTTCGAAGAAGTTCTCCAAGTCGTCGCTCGCTCCGAGTTGAGTAACTCATCGCGAAATTCGAATCTCAAGGATTTACAAAGGCGATGCGATGAAGATGTTAGGATTAAGAACCTCGAGTTCTTAGGCGAATCGAGACCTTTACTGTATGGATTTTCTGATAATAAATCCGTTTGTTGA 462 53.03 MSPETSKSHKIRRIVRLRQMLQHWRKKARAAANRAPPADVPAGHVAVCVGSDCRRFIVRATFLNHPIFRKLLSQAEEEYGFETRGPLALPCDESVFEEVLQVVARSELSNSSRNSNLKDLQRRCDEDVRIKNLEFLGESRPLLYGFSDNKSVC 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4904690 4905151 - ClG42_11g0052700.10 Clacu11g0527 261404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0527 153 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733(InterPro)
Clacu11g0527 153 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 103 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2283 Clacu-Chr9:37587843 Clacu11g0527 Clacu-Chr11:4904690 2.50E-13 dispersed
Clacu11g0527 Clacu-Chr11:4904690 Clacu02g0467 Clacu-Chr2:4205877 2.40E-10 wgd
Clacu11g0527 Clacu-Chr11:4904690 Clacu05g2012 Clacu-Chr5:29142112 9.40E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0527 K14488 - csv:101222974 262.692