Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0540 ATGGAGGCCATTCGAAAGCAAGCCACCAAGCTCCGTGAACAGGTCGCTCGCCAGCAACAGGCTGTACTCAAACAGTTTGGTGCCGGAGGATATGGAGGTTCAGATAACATTATTACGGATGAGGCAGAGCTTCATCAACATCAAAAACTAGAAAAGTTGTATATATCAACTCGTGCTGGAAAGCACTTTCAAAGGGACATTGTACGAGGAGTAGAGGGCTATATTGTTACTGGTTCAAAACAAGTCGAAATAGGAACAAAGTTGTCAGAGGATAGCAGGAAATATGGTGCTGAAAATACATGCACCAGTGGCAACACATTATCGAAAGCTGCATTAAATTATGGACGAGCCAGAGCTCAAATGGAGAAAGAGCGTGGAAACATGTTGAAGGCTCTTGGCACTCAGGTAGCAGAGCCATTGAGAGCAATGGTTATGGGCGCTCCTTTGGAGGACGCTCGACATCTTGCTCAACGTTATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAGGTTTTCAAGCGACAGGCAAGAGTGAGGGAAACACCAGGCAATGCTGAGATTACTGTGAAGTTGGAAGCTGCCGAAGCAAAATTGCAAGATCTAAAGTCAAATATGGCAACAATGGGAAAGGAAGCTGCAGCAGCCATGGCTGCTGTTGAAGCTCAACAACAAAGGCTAACTCTCCAGCGACTCATTGCCATGGTTGAAGCAGAACGTGCTTATCATCAGAGAGTCCTTCAGATACTTGATCAGCTTGAAGGCGAGATGATATTGGAGCGGCAGAGAATTGAAGCTCCTCCTACACCTCCTCCTCCTGGTCCAAGTGTCGACAATACCATGCCACCTCCCCCATCATATGAAGAAGTCAATGGTGTATTTGCTTCTCAAGCACATAATGGCTCAACAGATTCCATGGGTTACTTTTTGGGGGAGGTTATGCATCCCTACCTAGCCGAGTCAGATGTTGAGCTCAATTTATCAGTTGGTGACTACGTCGTCGTTAGAAAGGTGTCGAACAATGGTTGGGCTGAGGGAGAGTGCAAAGGTAAAGCAGGTTGGTTCCCGTTTGGATACATTGAAAGAAGAGAACGCGTACTTGCAAGTAAGGTTGCTGAGGTGTTTTGA 1131 46.42 MEAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSKAALNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARVRETPGNAEITVKLEAAEAKLQDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMILERQRIEAPPTPPPPGPSVDNTMPPPPSYEEVNGVFASQAHNGSTDSMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5074041 5077997 + ClG42_11g0054000.10 Clacu11g0540 261417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0540 376 Coils Coil 186 213 - -
Clacu11g0540 376 ProSiteProfiles Src homology 3 (SH3) domain profile. 307 366 IPR001452 GO:0005515(InterPro)
Clacu11g0540 376 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Clacu11g0540 376 Pfam Variant SH3 domain 314 362 IPR001452 GO:0005515(InterPro)
Clacu11g0540 376 Gene3D SH3 Domains 312 364 - -
Clacu11g0540 376 SUPERFAMILY SH3-domain 268 364 IPR036028 GO:0005515(InterPro)
Clacu11g0540 376 MobiDBLite consensus disorder prediction 266 283 - -
Clacu11g0540 376 SMART SH3_2 310 365 IPR001452 GO:0005515(InterPro)
Clacu11g0540 376 MobiDBLite consensus disorder prediction 265 284 - -
Clacu11g0540 376 Coils Coil 149 169 - -
Clacu11g0540 376 PANTHER SH3 DOMAIN-CONTAINING 10 363 IPR050384 -
Clacu11g0540 376 Coils Coil 220 240 - -
Clacu11g0540 376 Coils Coil 1 21 - -
Clacu11g0540 376 Gene3D Arfaptin homology (AH) domain/BAR domain 43 261 IPR027267 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0540 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0724 Clacu-Chr3:8042669 Clacu11g0540 Clacu-Chr11:5074041 1.40E-98 dispersed
Clacu11g0540 Clacu-Chr11:5074041 Clacu11g1804 Clacu-Chr11:29212483 3.60E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00372 Cam11g0417 Cec11g0413 Cco11g0406 Clacu11g0540 Cmu11g0397 Cre11g0884 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37