Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0546 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTACTGCTGATATTTTTCTGTAA 576 51.74 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSTADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5147407 5147982 - ClG42_11g0054600.10 Clacu11g0546 261423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0546 191 CDD Bbox1_BBX-like 60 103 IPR049808 -
Clacu11g0546 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Clacu11g0546 191 CDD Bbox1_BBX-like 5 47 IPR049808 -
Clacu11g0546 191 Gene3D Classic Zinc Finger 1 102 - -
Clacu11g0546 191 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Clacu11g0546 191 SMART bboxneu5 56 103 IPR000315 GO:0008270(InterPro)
Clacu11g0546 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270(InterPro)
Clacu11g0546 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Clacu11g0546 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270(InterPro)
Clacu11g0546 191 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1414 Clacu-Chr9:19608608 Clacu11g0546 Clacu-Chr11:5147407 7.60E-35 dispersed
Clacu07g1009 Clacu-Chr7:24510854 Clacu11g0546 Clacu-Chr11:5147407 2.40E-30 transposed
Clacu11g0546 Clacu-Chr11:5147407 Clacu02g0505 Clacu-Chr2:4639427 4.00E-47 wgd
Clacu11g0546 Clacu-Chr11:5147407 Clacu08g1617 Clacu-Chr8:25959372 8.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48617 PF00643 zf-B_box 1.60E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0546 - - - 0.0