Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0546 | ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTACTGCTGATATTTTTCTGTAA | 576 | 51.74 | MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSTADIFL | 191 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5147407 | 5147982 | - | ClG42_11g0054600.10 | Clacu11g0546 | 261423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0546 | 191 | CDD | Bbox1_BBX-like | 60 | 103 | IPR049808 | - | |
Clacu11g0546 | 191 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Clacu11g0546 | 191 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Clacu11g0546 | 191 | Gene3D | Classic Zinc Finger | 1 | 102 | - | - | |
Clacu11g0546 | 191 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Clacu11g0546 | 191 | SMART | bboxneu5 | 56 | 103 | IPR000315 | GO:0008270(InterPro) | |
Clacu11g0546 | 191 | ProSiteProfiles | Zinc finger B-box type profile. | 56 | 103 | IPR000315 | GO:0008270(InterPro) | |
Clacu11g0546 | 191 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 184 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Clacu11g0546 | 191 | Pfam | B-box zinc finger | 58 | 99 | IPR000315 | GO:0008270(InterPro) | |
Clacu11g0546 | 191 | Pfam | B-box zinc finger | 3 | 46 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu09g1414 | Clacu-Chr9:19608608 | Clacu11g0546 | Clacu-Chr11:5147407 | 7.60E-35 | dispersed | |
Clacu07g1009 | Clacu-Chr7:24510854 | Clacu11g0546 | Clacu-Chr11:5147407 | 2.40E-30 | transposed | |
Clacu11g0546 | Clacu-Chr11:5147407 | Clacu02g0505 | Clacu-Chr2:4639427 | 4.00E-47 | wgd | |
Clacu11g0546 | Clacu-Chr11:5147407 | Clacu08g1617 | Clacu-Chr8:25959372 | 8.10E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48617 | PF00643 | zf-B_box | 1.60E-06 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0546 | - | - | - | 0.0 |