Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0554 | ATGGCAACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAGTTCTTCCACGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGATAACGTCCGTTGGAGCAGTGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGAACCGGAGTGAAATGCTTGGCACAAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCATAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGCGAGGATGGCTGCAGAAATGGCGCTTCTAGAGACGAACAGATGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAATTCAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCGAGTGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTGTACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCTGGATGTGGGGCATCTAAACCATATACTGCACTTGCTCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCACGGCAGACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGAAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGTCAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACCGAAAGATGTAGTGCTGGAGACATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCTCGAAATGAGCTGGTGAAACCGAGTGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTGGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATGCCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCGCTTCCCATCTTTATCATGATTTTGTTGTGTAA | 2046 | 44.92 | MATYYSSSNNERDATPILYSRGSLLGSYEETTVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAVGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGTNSMRGPTNVLHGGHNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQMRNGENLPPNFQELAKGELSQFSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAVKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEARNELVKPSEELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGMPMPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGASHLYHDFVV | 681 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5221210 | 5224331 | + | ClG42_11g0055400.10 | Clacu11g0554 | 261431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0554 | 681 | Gene3D | - | 401 | 479 | - | - | |
Clacu11g0554 | 681 | SUPERFAMILY | Homeodomain-like | 407 | 474 | IPR009057 | - | |
Clacu11g0554 | 681 | FunFam | BEL1-like homeodomain protein 4 | 409 | 471 | - | - | |
Clacu11g0554 | 681 | SMART | prehox3 | 201 | 356 | IPR006563 | - | |
Clacu11g0554 | 681 | ProSiteProfiles | 'Homeobox' domain profile. | 403 | 466 | IPR001356 | GO:0003677(InterPro) | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 151 | 186 | - | - | |
Clacu11g0554 | 681 | Pfam | Homeobox KN domain | 423 | 462 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu11g0554 | 681 | SMART | HOX_1 | 406 | 470 | IPR001356 | GO:0003677(InterPro) | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 231 | 285 | - | - | |
Clacu11g0554 | 681 | Pfam | Associated with HOX | 208 | 355 | IPR006563 | - | |
Clacu11g0554 | 681 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 158 | 503 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Clacu11g0554 | 681 | Coils | Coil | 288 | 308 | - | - | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 253 | 285 | - | - | |
Clacu11g0554 | 681 | CDD | homeodomain | 406 | 467 | IPR001356 | GO:0003677(InterPro) | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 231 | 252 | - | - | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 495 | 510 | - | - | |
Clacu11g0554 | 681 | MobiDBLite | consensus disorder prediction | 486 | 520 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1333 | Clacu-Chr2:26379173 | Clacu11g0554 | Clacu-Chr11:5221210 | 3.30E-72 | dispersed | |
Clacu02g2295 | Clacu-Chr2:35989727 | Clacu11g0554 | Clacu-Chr11:5221210 | 1.20E-80 | dispersed | |
Clacu03g0294 | Clacu-Chr3:3443229 | Clacu11g0554 | Clacu-Chr11:5221210 | 1.90E-61 | dispersed | |
Clacu08g1854 | Clacu-Chr8:27831823 | Clacu11g0554 | Clacu-Chr11:5221210 | 1.20E-37 | dispersed | |
Clacu09g0275 | Clacu-Chr9:2475124 | Clacu11g0554 | Clacu-Chr11:5221210 | 1.40E-91 | dispersed | |
Clacu10g2121 | Clacu-Chr10:34445374 | Clacu11g0554 | Clacu-Chr11:5221210 | 3.70E-49 | dispersed | |
Clacu11g0554 | Clacu-Chr11:5221210 | Clacu10g1809 | Clacu-Chr10:31768159 | 3.30E-83 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48618 | PF07526 | POX | 4.00E-51 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0554 | - | - | - | 0.0 |