Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0554 ATGGCAACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAGTTCTTCCACGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGATAACGTCCGTTGGAGCAGTGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGAACCGGAGTGAAATGCTTGGCACAAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCATAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGCGAGGATGGCTGCAGAAATGGCGCTTCTAGAGACGAACAGATGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAATTCAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCGAGTGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTGTACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCTGGATGTGGGGCATCTAAACCATATACTGCACTTGCTCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCACGGCAGACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGAAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGTCAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACCGAAAGATGTAGTGCTGGAGACATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCTCGAAATGAGCTGGTGAAACCGAGTGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTGGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATGCCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCGCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2046 44.92 MATYYSSSNNERDATPILYSRGSLLGSYEETTVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAVGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGTNSMRGPTNVLHGGHNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQMRNGENLPPNFQELAKGELSQFSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAVKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEARNELVKPSEELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGMPMPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGASHLYHDFVV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5221210 5224331 + ClG42_11g0055400.10 Clacu11g0554 261431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0554 681 Gene3D - 401 479 - -
Clacu11g0554 681 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Clacu11g0554 681 FunFam BEL1-like homeodomain protein 4 409 471 - -
Clacu11g0554 681 SMART prehox3 201 356 IPR006563 -
Clacu11g0554 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Clacu11g0554 681 MobiDBLite consensus disorder prediction 151 186 - -
Clacu11g0554 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu11g0554 681 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Clacu11g0554 681 MobiDBLite consensus disorder prediction 231 285 - -
Clacu11g0554 681 Pfam Associated with HOX 208 355 IPR006563 -
Clacu11g0554 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 158 503 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu11g0554 681 Coils Coil 288 308 - -
Clacu11g0554 681 MobiDBLite consensus disorder prediction 253 285 - -
Clacu11g0554 681 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Clacu11g0554 681 MobiDBLite consensus disorder prediction 231 252 - -
Clacu11g0554 681 MobiDBLite consensus disorder prediction 151 167 - -
Clacu11g0554 681 MobiDBLite consensus disorder prediction 495 510 - -
Clacu11g0554 681 MobiDBLite consensus disorder prediction 486 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1333 Clacu-Chr2:26379173 Clacu11g0554 Clacu-Chr11:5221210 3.30E-72 dispersed
Clacu02g2295 Clacu-Chr2:35989727 Clacu11g0554 Clacu-Chr11:5221210 1.20E-80 dispersed
Clacu03g0294 Clacu-Chr3:3443229 Clacu11g0554 Clacu-Chr11:5221210 1.90E-61 dispersed
Clacu08g1854 Clacu-Chr8:27831823 Clacu11g0554 Clacu-Chr11:5221210 1.20E-37 dispersed
Clacu09g0275 Clacu-Chr9:2475124 Clacu11g0554 Clacu-Chr11:5221210 1.40E-91 dispersed
Clacu10g2121 Clacu-Chr10:34445374 Clacu11g0554 Clacu-Chr11:5221210 3.70E-49 dispersed
Clacu11g0554 Clacu-Chr11:5221210 Clacu10g1809 Clacu-Chr10:31768159 3.30E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48618 PF07526 POX 4.00E-51 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0554 - - - 0.0