Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0569 ATGACAAAGCTCATGGTCGAAGGTCAGCCTAAGTTTATCTTAGGCTTTTTCGAGTTGAATATTTTCATCCCCCGTTTAATCTCGGTTCTACCGCACTTCCGTGGAAGTTGGGTGTGCGGGGGAAAATCATTGAAGTCACCACTATTTAGGTTTGGTCAAGTTTTTAGTTCTAATATGGCTGGCGATCCTTTGACAAGCTCTAATGGCAATGCTAATGTAAATGCACCACCTGATCCTCGGAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATATGGGCATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAGCTTTTTTAAAAACATAACCACAACAACATCCGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCTGCTGAGCATCGGCCACTACCTGGTCGTCTAAATGTTGTTCTGACTCGCTCTGGGAGTTTTGACATTGCGACTGTTGAAAATGTTATTATATGTGGTAGTATAACGTCAGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGCGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAGTCTATGTTTCAACCATGGTACTCATCCTTTCCAGTGGTGGAAAATAGTTTGCGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACTGAATCCCCCATTGATCAGAACAATGGTCTGGACTCTCATAAGAAACCTGATTTTTCTAACTTTGAGGCTAAGAAGTTCTCTTTCCTACCTAAGGAGATCTTTGAGAGGCATGAGGAGTACTTGTACCTAAACCTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACAGGGACAGGTACTTTGTCAAGATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCACTGCTTACAACTAAGAAAGTATTTTGGCGGGGGGTTGTTGAAGAACTTCTTTGGTTCATCAGTGGTTCAACTAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGATTACCTCGATAGTATTGGTTTAAGAGAAAGAGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAATGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGTGACTTCATTCACGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATCGATTCTTTTGTGGCAGATGATTTTGAACTAACAGGTACAAGCATCACAGAGGCTTTGGTTGATATGCTGAGTGATTTGATTCAATATCTTTTGAATGATCATAAGGGGTTGGAACGCAGTATCGGAGTTCGTATGGCGATGTTGTCATGGAGGCTAGGACAGGATAATTTGCTTGAAGTTTCAGTGGAATTGGATATTTTTTCCCCCAAGAGAATATGA 1902 42.17 MTKLMVEGQPKFILGFFELNIFIPRLISVLPHFRGSWVCGGKSLKSPLFRFGQVFSSNMAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWRLPSDLSFFKNITTTTSDHGKRNAVLMGRKTWESIPAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIETNVECDTFMPAIDKSMFQPWYSSFPVVENSLRYSFTSYVRVRSSTESPIDQNNGLDSHKKPDFSNFEAKKFSFLPKEIFERHEEYLYLNLVQEIISDGIPKDDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGTSITEALVDMLSDLIQYLLNDHKGLERSIGVRMAMLSWRLGQDNLLEVSVELDIFSPKRI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5391238 5398560 + ClG42_11g0056900.10 Clacu11g0569 261446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0569 633 CDD DHFR 86 258 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Clacu11g0569 633 PANTHER THYMIDYLATE SYNTHASE 1 105 577 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Clacu11g0569 633 NCBIfam thymidylate synthase 306 575 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 Pfam Thymidylate synthase 306 573 IPR023451 -
Clacu11g0569 633 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 65 260 - -
Clacu11g0569 633 ProSitePatterns Thymidylate synthase active site. 448 476 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 FunFam Possible thymidylate synthase 297 584 - -
Clacu11g0569 633 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 94 116 IPR017925 GO:0004146(InterPro)
Clacu11g0569 633 Gene3D Dihydrofolate Reductase, subunit A 66 261 IPR024072 -
Clacu11g0569 633 CDD TS_Pyrimidine_HMase 306 539 IPR023451 -
Clacu11g0569 633 Pfam Dihydrofolate reductase 84 259 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Clacu11g0569 633 PRINTS Thymidylate synthase family signature 481 507 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 PRINTS Thymidylate synthase family signature 437 456 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 PRINTS Thymidylate synthase family signature 463 478 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 PRINTS Thymidylate synthase family signature 519 536 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 PRINTS Thymidylate synthase family signature 344 365 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 82 259 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Clacu11g0569 633 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 261 574 IPR036926 -
Clacu11g0569 633 Hamap Thymidylate synthase [thyA]. 303 604 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Clacu11g0569 633 SUPERFAMILY Dihydrofolate reductase-like 80 259 IPR024072 -
Clacu11g0569 633 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 295 581 IPR036926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0569 K13998 - - csv:101208660 1006.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43