Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0579 ATGATCATGCACCATGATGTCAGTGAATATTGTTTGGTAAAACAACCACTTACCGGCCGTGGAGAAAACGAAACAGCAACTCCAAATTCCAAACCCTCAGATTGTTCTTCGTCGCCGGTGGAAGCTGCTACATTTCTCCGATTCAACTCGAAAATGGAGGAGAAAAGCAAGATTCTGATCATTGGAGCAACAGGTTACCTAGGGTTTCATTTGGCTCAAGCCAGCTCCAATTCTTCTCACCCTACATTTGCTCTCATCAGAGATTCTACTTTCTCTTCACCTCACAAACTAGACAAGCTCCGAGCTCTTTCCGATGCCGGAGTTAAATTCCTCAAGGGTTCTCTAGAAGACGAAGCTAGCCTTGTGGAAGCTATTAATCAAGTGGATGTGGTCATTTGTGCTGTTTCATCTAAACAGGTGTCGGAACAGAAGCCTCTGATTCGAATCATAAAACAAACTGGATCCATTAAGAGGTTTATTCCATCGGAATTTGGACTTGATCCGGATAAGGTTCAAATATTAAATATGGATTACGACTTCTATTCCCGCAAAGCTGAAATTCGTCGGCTAATTGAAGCTGAAGGCATTCCATATACCATAGTTTCTTGCAATTTTTTTACAAGTTATTTACTTCCTTCCCTTGTACAACCAGGCATGAAAAGTCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGAAATACCAAAGGTGTATTTGTGAAGGTCAATGATGTTGCTGCCTTGACAATTAGTGCAGTGGATGATCCACGCACGTTGAACAAGGTAGTTTATTTAAGGCCCGAAGGAAATGTTTATTCCTTGAATGAACTGGTTGAGATTTGGGAGAGCAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTAAAGAAAATTAAAGAGACTCCTTATCCTGACAACATGGCTTTCATTTTCATATATTCTGCATTTATAAAGGGAGATCAAACATACTTCGATATTGAGGCATCAAATGGCGTTGATGGTTCACAATTAGATCCACAACTCAAGCATACCACGATTAGTGAGTTTTTGGACACCCTATTGGGCAATTTGGACATTTTAAGAATATTCCATTTCGCAATATATATACGTGAATTTCAGTTCCAAGTCGCACCCGTCAAAGCAATATTTCTAAACAACGACAAAGGAACTCTCCCAGCGTTTTCTTCTTTCTTTCTGCAGCTCGACGGTAGTCCTCCGATCAGCCATTTCTTCGCCGGAAACCTTACTCCAATGGCTCAGAATCTCAAGGTTCTTATTATCGGAGGAACTGGCTACATCGGAAAATTCATAGTACAAGCCAGCGCCAAAGCCGGTCATCCTACCTATGCCTTGATCCGCAAGTCTTCGCTCGCAAGCCCCGCCAAGTATCGAATCATCAATCATTTCAAAAGCTTAGGGGTCAATTTTCTCTTCGGCGATCTCTTTGACAATGAAAGTTTGGTTAAGGCGATTAAGCAGGTTGATGTGGTGATATCAACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGGTCCTATCAGCTATCAAACAAGCTGGCAATGTGAAGAGATTCTTTCCTTCTGAGTTCGGCAACGATGCAGATCATATCGATGCAGTGGAGCCAGCGAAATCAATGTATGCTGCAAAGGCTGAATTTCGTAGAGCTGTTGAGGCTGAGGGAATCCCACATACATTTGTCGTATGCAATTTCTTCGACGGTTACTTTCTAAGCAACTTGTCTCAACCAGATGCAAGCGTCCCACCTAGAGACAAAGTCATAATCTTAGGGGATGGAACTCCCAAAGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACAATCCGAGCTATCGACGATCCAAGGACCCTCGACAAGATCATGTACCTTAGACCCCCAGCCAACATCTACTCAACCAATGATCTCGTCTCGCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGGATCTACGTCCCAGAGGAGGAAGTGTTGAAGAACATCAAAGAGACTTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCTCAAGTGAAAGGATCTCAAACTAATTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCTTTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTGA 2193 42.45 MIMHHDVSEYCLVKQPLTGRGENETATPNSKPSDCSSSPVEAATFLRFNSKMEEKSKILIIGATGYLGFHLAQASSNSSHPTFALIRDSTFSSPHKLDKLRALSDAGVKFLKGSLEDEASLVEAINQVDVVICAVSSKQVSEQKPLIRIIKQTGSIKRFIPSEFGLDPDKVQILNMDYDFYSRKAEIRRLIEAEGIPYTIVSCNFFTSYLLPSLVQPGMKSPPRDKVTIFGDGNTKGVFVKVNDVAALTISAVDDPRTLNKVVYLRPEGNVYSLNELVEIWESKIGKKLEKNYVSEEELLKKIKETPYPDNMAFIFIYSAFIKGDQTYFDIEASNGVDGSQLDPQLKHTTISEFLDTLLGNLDILRIFHFAIYIREFQFQVAPVKAIFLNNDKGTLPAFSSFFLQLDGSPPISHFFAGNLTPMAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRKSSLASPAKYRIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKVLSAIKQAGNVKRFFPSEFGNDADHIDAVEPAKSMYAAKAEFRRAVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVIILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLDKIMYLRPPANIYSTNDLVSLWERKIGKSLKRIYVPEEEVLKNIKETSYPLNIELALCHTAQVKGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5485501 5493410 - ClG42_11g0057900.10 Clacu11g0579 261456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0579 730 Gene3D - 57 343 - -
Clacu11g0579 730 CDD PCBER_SDR_a 57 335 IPR045312 GO:0016491(InterPro)
Clacu11g0579 730 Gene3D - 428 716 - -
Clacu11g0579 730 PANTHER PINORESINOL REDUCTASE-RELATED 428 730 IPR050608 -
Clacu11g0579 730 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 428 689 IPR036291 -
Clacu11g0579 730 CDD PCBER_SDR_a 428 725 IPR045312 GO:0016491(InterPro)
Clacu11g0579 730 Pfam NmrA-like family 429 660 IPR008030 -
Clacu11g0579 730 Pfam NmrA-like family 58 289 IPR008030 -
Clacu11g0579 730 Coils Coil 286 306 - -
Clacu11g0579 730 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 326 IPR036291 -
Clacu11g0579 730 Gene3D - 576 726 - -
Clacu11g0579 730 Gene3D - 203 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0579 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0550 Clacu-Chr10:6634308 Clacu11g0579 Clacu-Chr11:5485501 1.40E-118 dispersed
Clacu11g0578 Clacu-Chr11:5478433 Clacu11g0579 Clacu-Chr11:5485501 3.10E-136 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00792 . . . . . . Bma05g00127 . . . . . . . . . . . . . . . . Cla11g00408 Cam11g0454 Cec11g0450 Cco11g0441 Clacu11g0579 Cmu11g0437 Cre11g0918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234