Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0583 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACAACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 990 42.32 MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5542861 5546909 - ClG42_11g0058300.10 Clacu11g0583 261460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0583 329 CDD bHLH_AtBPE_like 148 234 - -
Clacu11g0583 329 Coils Coil 205 225 - -
Clacu11g0583 329 Gene3D - 155 230 IPR036638 GO:0046983(InterPro)
Clacu11g0583 329 SMART finulus 164 214 IPR011598 GO:0046983(InterPro)
Clacu11g0583 329 MobiDBLite consensus disorder prediction 80 139 - -
Clacu11g0583 329 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983(InterPro)
Clacu11g0583 329 FunFam Basic helix-loop-helix transcription factor 155 227 - -
Clacu11g0583 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 228 IPR036638 GO:0046983(InterPro)
Clacu11g0583 329 MobiDBLite consensus disorder prediction 90 116 - -
Clacu11g0583 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983(InterPro)
Clacu11g0583 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 268 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu11g0583 329 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0843 Clacu-Chr9:7767241 Clacu11g0583 Clacu-Chr11:5542861 2.20E-33 dispersed
Clacu09g0937 Clacu-Chr9:8673962 Clacu11g0583 Clacu-Chr11:5542861 1.40E-09 dispersed
Clacu10g1713 Clacu-Chr10:30633253 Clacu11g0583 Clacu-Chr11:5542861 2.20E-33 dispersed
Clacu11g0583 Clacu-Chr11:5542861 Clacu11g1844 Clacu-Chr11:29565815 6.10E-11 dispersed
Clacu11g0583 Clacu-Chr11:5542861 Clacu02g0522 Clacu-Chr2:4882399 4.20E-44 wgd
Clacu11g0583 Clacu-Chr11:5542861 Clacu06g1762 Clacu-Chr6:28176299 5.30E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48621 PF00010 HLH 2.60E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0583 - - - 0.0