Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0583 | ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACAACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA | 990 | 42.32 | MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5542861 | 5546909 | - | ClG42_11g0058300.10 | Clacu11g0583 | 261460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0583 | 329 | CDD | bHLH_AtBPE_like | 148 | 234 | - | - | |
Clacu11g0583 | 329 | Coils | Coil | 205 | 225 | - | - | |
Clacu11g0583 | 329 | Gene3D | - | 155 | 230 | IPR036638 | GO:0046983(InterPro) | |
Clacu11g0583 | 329 | SMART | finulus | 164 | 214 | IPR011598 | GO:0046983(InterPro) | |
Clacu11g0583 | 329 | MobiDBLite | consensus disorder prediction | 80 | 139 | - | - | |
Clacu11g0583 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 209 | IPR011598 | GO:0046983(InterPro) | |
Clacu11g0583 | 329 | FunFam | Basic helix-loop-helix transcription factor | 155 | 227 | - | - | |
Clacu11g0583 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 228 | IPR036638 | GO:0046983(InterPro) | |
Clacu11g0583 | 329 | MobiDBLite | consensus disorder prediction | 90 | 116 | - | - | |
Clacu11g0583 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 158 | 208 | IPR011598 | GO:0046983(InterPro) | |
Clacu11g0583 | 329 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 81 | 268 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Clacu11g0583 | 329 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu09g0843 | Clacu-Chr9:7767241 | Clacu11g0583 | Clacu-Chr11:5542861 | 2.20E-33 | dispersed | |
Clacu09g0937 | Clacu-Chr9:8673962 | Clacu11g0583 | Clacu-Chr11:5542861 | 1.40E-09 | dispersed | |
Clacu10g1713 | Clacu-Chr10:30633253 | Clacu11g0583 | Clacu-Chr11:5542861 | 2.20E-33 | dispersed | |
Clacu11g0583 | Clacu-Chr11:5542861 | Clacu11g1844 | Clacu-Chr11:29565815 | 6.10E-11 | dispersed | |
Clacu11g0583 | Clacu-Chr11:5542861 | Clacu02g0522 | Clacu-Chr2:4882399 | 4.20E-44 | wgd | |
Clacu11g0583 | Clacu-Chr11:5542861 | Clacu06g1762 | Clacu-Chr6:28176299 | 5.30E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48621 | PF00010 | HLH | 2.60E-06 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0583 | - | - | - | 0.0 |