Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0593 ATGTCTTTTGCTCGAGCACACTACACGTCGAGAGGTGTTTTCTACCTTTTTCAAGGTAAAGAGTTTTCTTCCCAAGCCACTTCATCCAGAGTTTCCCAACGCCGCCGCTGTCGTTTTTGGAGCACCGGTCAGAGTTTCTCCGGCACTATTCAGACCACTACTCCTTTGCCGGAAACTCTACTAATGTCTTCTTCATCCGATCCTCCTTCCCCTTCTTCTTCTGATTCTGATCCCTCTAATCCCCCTCCTTCTCCACCTCCTTCCACTGCGCCGCCTCCCGATGCTTCTCCGCCTCCCCCGGATTCCTCCTCCTCCTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCGCCGCCGCCTAACGACACCTCCCCGCCTCCTGGTGATTCCTCTTCTTCACCGCCACCGCCGAAGGATTCCAACTCTAATTCTCCTCCGTCGCCGCCGCCTCCTCCACCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCGCGTGGATCCTCAAGGCATTCTCCTCCGCCTCCGAGATCGATCGACTCAGGATCCTCAGACTCCTCGTCCGGCGGTTCCGCTCCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTACTTTTCGCCATGGCCTTGATATTCTTCGCTTGCACCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGATGAACAGTCCGGTCCGAAAGGTGGGGATCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGCCAATCAGCGGCGGAACCCAAGGAGGAGGGTGGCCATCGCCGCCGCCGCCTCCTCCGCCGGGATTATTGAGCAGTGATATGAGCTCGAATTTCTCAGGGCCACATGGGCCACCGTTGCCGCCGCCGCACCCATCGGTGGCTCTGGGGTTCAATAAGAGCACTTTCACGTATGATGAGCTGATGGCGGCAACCTCGGGATTCTCTCCGGCGAATCTGTTGGGGCAAGGAGGATTCGGGTATGTTCATAAAGGACTACTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCCTGAAAACAGGAAGCGGGCAAGGAGATCGAGAATTTGCGGCCGAGGTGGAGATCATCAGCCGCGTTCACCACCGCCATCTGGTGTCCCTTGTCGGGTATTGCATCGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGGCCACCATTGGACTGGTCGACGAGAACGAAGATCGCATTGGGCTCAGCCAAGGGCCTAGCCTATCTCCACGAAGACTGTCATCCTCGCATTATCCACAGAGATATCAAGACGGCCAATATTCTTATAGACATGAGTTTCGAGGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCGACTCGCGTCATGGGCACATTTGGATATTTGGCTCCGGAGTACGCATCAAGTGGGAAGCTAACGGAGAAATCAGATATATTCTCATTTGGAGTAATGCTTTTGGAGCTGATTACCGGAAGACGACCGGTGGACACGGCCGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTGTGAAAGCAATGAGTAATGGAAACTATGATGAGTTGGCTGATTCACGGTTAGAGAAGAACTATGATGTCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCGGCTCGGCGCCGTCCCAAAATGAGCCAGGTGGTACGAGCATTGGAAGGCGATGTGTCGCTGGATGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGCTCCTATAGTGCCGACATGAAGAGGTTCCGAAAGGTGGCGTTGGACAGCCGCGAGTACGCAAGCAGCGATTATGGCGGCACTAGCGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATGAGTCGGAAGCCTAGTCGTTTATCTTCCCCCGATCCACCCCCCTCACATTCTTAA 2121 54.69 MSFARAHYTSRGVFYLFQGKEFSSQATSSRVSQRRRCRFWSTGQSFSGTIQTTTPLPETLLMSSSSDPPSPSSSDSDPSNPPPSPPPSTAPPPDASPPPPDSSSSSPPPPDSSPPPPPDASSPPPPDASPPPPNDTSPPPGDSSSSPPPPKDSNSNSPPSPPPPPPPPPPPPPPPPPRGSSRHSPPPPRSIDSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNSNSMYFDEQSGPKGGDPYYNGRNHNWNNPSEHFVNMAPISGGTQGGGWPSPPPPPPPGLLSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATSGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRTKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDIFSFGVMLLELITGRRPVDTAGEMEDSLVDWSRPLCVKAMSNGNYDELADSRLEKNYDVQEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLDDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYASSDYGGTSEYGLNPSSTSSEMSRKPSRLSSPDPPPSHS 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5664796 5672297 - ClG42_11g0059300.10 Clacu11g0593 261470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0593 706 SUPERFAMILY Protein kinase-like (PK-like) 319 616 IPR011009 -
Clacu11g0593 706 MobiDBLite consensus disorder prediction 622 648 - -
Clacu11g0593 706 ProSiteProfiles Protein kinase domain profile. 344 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0593 706 MobiDBLite consensus disorder prediction 186 205 - -
Clacu11g0593 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0593 706 MobiDBLite consensus disorder prediction 669 694 - -
Clacu11g0593 706 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524(InterPro)
Clacu11g0593 706 MobiDBLite consensus disorder prediction 632 648 - -
Clacu11g0593 706 MobiDBLite consensus disorder prediction 668 706 - -
Clacu11g0593 706 Pfam Protein tyrosine and serine/threonine kinase 349 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0593 706 Gene3D Phosphorylase Kinase; domain 1 321 419 - -
Clacu11g0593 706 MobiDBLite consensus disorder prediction 24 73 - -
Clacu11g0593 706 FunFam proline-rich receptor-like protein kinase PERK1 322 419 - -
Clacu11g0593 706 MobiDBLite consensus disorder prediction 74 184 - -
Clacu11g0593 706 MobiDBLite consensus disorder prediction 238 318 - -
Clacu11g0593 706 SMART serkin_6 344 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0593 706 Gene3D Transferase(Phosphotransferase) domain 1 420 627 - -
Clacu11g0593 706 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 179 660 IPR047117 -
Clacu11g0593 706 MobiDBLite consensus disorder prediction 24 205 - -
Clacu11g0593 706 FunFam Proline-rich receptor-like protein kinase PERK1 420 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0921 Clacu-Chr6:12329891 Clacu11g0593 Clacu-Chr11:5664796 8.40E-158 dispersed
Clacu11g0384 Clacu-Chr11:3501975 Clacu11g0593 Clacu-Chr11:5664796 6.60E-161 dispersed
Clacu11g0593 Clacu-Chr11:5664796 Clacu11g0675 Clacu-Chr11:6517974 1.70E-122 dispersed
Clacu11g0589 Clacu-Chr11:5622503 Clacu11g0593 Clacu-Chr11:5664796 7.90E-37 proximal
Clacu01g0789 Clacu-Chr1:8571361 Clacu11g0593 Clacu-Chr11:5664796 9.30E-52 transposed
Clacu05g2760 Clacu-Chr5:35029126 Clacu11g0593 Clacu-Chr11:5664796 2.20E-54 transposed
Clacu07g0911 Clacu-Chr7:22836339 Clacu11g0593 Clacu-Chr11:5664796 9.40E-170 transposed
Clacu11g0593 Clacu-Chr11:5664796 Clacu05g2110 Clacu-Chr5:29894069 7.40E-65 wgd
Clacu11g0593 Clacu-Chr11:5664796 Clacu06g1745 Clacu-Chr6:28042147 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73951 PF07714 PK_Tyr_Ser-Thr 2.50E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0593 - - - 0.0