Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0593 | ATGTCTTTTGCTCGAGCACACTACACGTCGAGAGGTGTTTTCTACCTTTTTCAAGGTAAAGAGTTTTCTTCCCAAGCCACTTCATCCAGAGTTTCCCAACGCCGCCGCTGTCGTTTTTGGAGCACCGGTCAGAGTTTCTCCGGCACTATTCAGACCACTACTCCTTTGCCGGAAACTCTACTAATGTCTTCTTCATCCGATCCTCCTTCCCCTTCTTCTTCTGATTCTGATCCCTCTAATCCCCCTCCTTCTCCACCTCCTTCCACTGCGCCGCCTCCCGATGCTTCTCCGCCTCCCCCGGATTCCTCCTCCTCCTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCGCCGCCGCCTAACGACACCTCCCCGCCTCCTGGTGATTCCTCTTCTTCACCGCCACCGCCGAAGGATTCCAACTCTAATTCTCCTCCGTCGCCGCCGCCTCCTCCACCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCGCGTGGATCCTCAAGGCATTCTCCTCCGCCTCCGAGATCGATCGACTCAGGATCCTCAGACTCCTCGTCCGGCGGTTCCGCTCCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTACTTTTCGCCATGGCCTTGATATTCTTCGCTTGCACCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGATGAACAGTCCGGTCCGAAAGGTGGGGATCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGCCAATCAGCGGCGGAACCCAAGGAGGAGGGTGGCCATCGCCGCCGCCGCCTCCTCCGCCGGGATTATTGAGCAGTGATATGAGCTCGAATTTCTCAGGGCCACATGGGCCACCGTTGCCGCCGCCGCACCCATCGGTGGCTCTGGGGTTCAATAAGAGCACTTTCACGTATGATGAGCTGATGGCGGCAACCTCGGGATTCTCTCCGGCGAATCTGTTGGGGCAAGGAGGATTCGGGTATGTTCATAAAGGACTACTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCCTGAAAACAGGAAGCGGGCAAGGAGATCGAGAATTTGCGGCCGAGGTGGAGATCATCAGCCGCGTTCACCACCGCCATCTGGTGTCCCTTGTCGGGTATTGCATCGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGGCCACCATTGGACTGGTCGACGAGAACGAAGATCGCATTGGGCTCAGCCAAGGGCCTAGCCTATCTCCACGAAGACTGTCATCCTCGCATTATCCACAGAGATATCAAGACGGCCAATATTCTTATAGACATGAGTTTCGAGGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCGACTCGCGTCATGGGCACATTTGGATATTTGGCTCCGGAGTACGCATCAAGTGGGAAGCTAACGGAGAAATCAGATATATTCTCATTTGGAGTAATGCTTTTGGAGCTGATTACCGGAAGACGACCGGTGGACACGGCCGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTGTGAAAGCAATGAGTAATGGAAACTATGATGAGTTGGCTGATTCACGGTTAGAGAAGAACTATGATGTCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCGGCTCGGCGCCGTCCCAAAATGAGCCAGGTGGTACGAGCATTGGAAGGCGATGTGTCGCTGGATGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGCTCCTATAGTGCCGACATGAAGAGGTTCCGAAAGGTGGCGTTGGACAGCCGCGAGTACGCAAGCAGCGATTATGGCGGCACTAGCGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATGAGTCGGAAGCCTAGTCGTTTATCTTCCCCCGATCCACCCCCCTCACATTCTTAA | 2121 | 54.69 | MSFARAHYTSRGVFYLFQGKEFSSQATSSRVSQRRRCRFWSTGQSFSGTIQTTTPLPETLLMSSSSDPPSPSSSDSDPSNPPPSPPPSTAPPPDASPPPPDSSSSSPPPPDSSPPPPPDASSPPPPDASPPPPNDTSPPPGDSSSSPPPPKDSNSNSPPSPPPPPPPPPPPPPPPPPRGSSRHSPPPPRSIDSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNSNSMYFDEQSGPKGGDPYYNGRNHNWNNPSEHFVNMAPISGGTQGGGWPSPPPPPPPGLLSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATSGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRTKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDIFSFGVMLLELITGRRPVDTAGEMEDSLVDWSRPLCVKAMSNGNYDELADSRLEKNYDVQEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLDDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYASSDYGGTSEYGLNPSSTSSEMSRKPSRLSSPDPPPSHS | 706 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5664796 | 5672297 | - | ClG42_11g0059300.10 | Clacu11g0593 | 261470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0593 | 706 | SUPERFAMILY | Protein kinase-like (PK-like) | 319 | 616 | IPR011009 | - | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 622 | 648 | - | - | |
Clacu11g0593 | 706 | ProSiteProfiles | Protein kinase domain profile. | 344 | 622 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 186 | 205 | - | - | |
Clacu11g0593 | 706 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 464 | 476 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 669 | 694 | - | - | |
Clacu11g0593 | 706 | ProSitePatterns | Protein kinases ATP-binding region signature. | 350 | 372 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 632 | 648 | - | - | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 668 | 706 | - | - | |
Clacu11g0593 | 706 | Pfam | Protein tyrosine and serine/threonine kinase | 349 | 616 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0593 | 706 | Gene3D | Phosphorylase Kinase; domain 1 | 321 | 419 | - | - | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 24 | 73 | - | - | |
Clacu11g0593 | 706 | FunFam | proline-rich receptor-like protein kinase PERK1 | 322 | 419 | - | - | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 74 | 184 | - | - | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 238 | 318 | - | - | |
Clacu11g0593 | 706 | SMART | serkin_6 | 344 | 616 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0593 | 706 | Gene3D | Transferase(Phosphotransferase) domain 1 | 420 | 627 | - | - | |
Clacu11g0593 | 706 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 179 | 660 | IPR047117 | - | |
Clacu11g0593 | 706 | MobiDBLite | consensus disorder prediction | 24 | 205 | - | - | |
Clacu11g0593 | 706 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 420 | 627 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g0921 | Clacu-Chr6:12329891 | Clacu11g0593 | Clacu-Chr11:5664796 | 8.40E-158 | dispersed | |
Clacu11g0384 | Clacu-Chr11:3501975 | Clacu11g0593 | Clacu-Chr11:5664796 | 6.60E-161 | dispersed | |
Clacu11g0593 | Clacu-Chr11:5664796 | Clacu11g0675 | Clacu-Chr11:6517974 | 1.70E-122 | dispersed | |
Clacu11g0589 | Clacu-Chr11:5622503 | Clacu11g0593 | Clacu-Chr11:5664796 | 7.90E-37 | proximal | |
Clacu01g0789 | Clacu-Chr1:8571361 | Clacu11g0593 | Clacu-Chr11:5664796 | 9.30E-52 | transposed | |
Clacu05g2760 | Clacu-Chr5:35029126 | Clacu11g0593 | Clacu-Chr11:5664796 | 2.20E-54 | transposed | |
Clacu07g0911 | Clacu-Chr7:22836339 | Clacu11g0593 | Clacu-Chr11:5664796 | 9.40E-170 | transposed | |
Clacu11g0593 | Clacu-Chr11:5664796 | Clacu05g2110 | Clacu-Chr5:29894069 | 7.40E-65 | wgd | |
Clacu11g0593 | Clacu-Chr11:5664796 | Clacu06g1745 | Clacu-Chr6:28042147 | 1.60E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73951 | PF07714 | PK_Tyr_Ser-Thr | 2.50E-46 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0593 | - | - | - | 0.0 |