Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0604 | ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACCGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAACAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACCCTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA | 1515 | 47.0 | MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5823888 | 5828449 | - | ClG42_11g0060400.10 | Clacu11g0604 | 261481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0604 | 504 | SMART | WRKY_cls | 230 | 288 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | SMART | WRKY_cls | 390 | 449 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 382 | 450 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | MobiDBLite | consensus disorder prediction | 195 | 234 | - | - | |
Clacu11g0604 | 504 | MobiDBLite | consensus disorder prediction | 326 | 369 | - | - | |
Clacu11g0604 | 504 | ProSiteProfiles | WRKY domain profile. | 225 | 289 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | FunFam | WRKY transcription factor 33 | 377 | 443 | - | - | |
Clacu11g0604 | 504 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Clacu11g0604 | 504 | ProSiteProfiles | WRKY domain profile. | 385 | 450 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 163 | 461 | IPR044810 | GO:0003700(InterPro) | |
Clacu11g0604 | 504 | FunFam | WRKY transcription factor | 221 | 290 | - | - | |
Clacu11g0604 | 504 | Gene3D | WRKY domain | 375 | 451 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | Gene3D | WRKY domain | 223 | 290 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | MobiDBLite | consensus disorder prediction | 281 | 311 | - | - | |
Clacu11g0604 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 227 | 289 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | Pfam | WRKY DNA -binding domain | 231 | 287 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu11g0604 | 504 | Pfam | WRKY DNA -binding domain | 391 | 448 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2593 | Clacu-Chr5:33778948 | Clacu11g0604 | Clacu-Chr11:5823888 | 1.20E-116 | dispersed | |
Clacu06g1333 | Clacu-Chr6:24244620 | Clacu11g0604 | Clacu-Chr11:5823888 | 8.30E-39 | dispersed | |
Clacu10g0378 | Clacu-Chr10:4791815 | Clacu11g0604 | Clacu-Chr11:5823888 | 4.30E-68 | dispersed | |
Clacu10g0439 | Clacu-Chr10:5455623 | Clacu11g0604 | Clacu-Chr11:5823888 | 9.80E-73 | dispersed | |
Clacu10g1153 | Clacu-Chr10:24150158 | Clacu11g0604 | Clacu-Chr11:5823888 | 5.80E-24 | dispersed | |
Clacu10g2036 | Clacu-Chr10:33827897 | Clacu11g0604 | Clacu-Chr11:5823888 | 5.40E-48 | dispersed | |
Clacu10g2214 | Clacu-Chr10:35149086 | Clacu11g0604 | Clacu-Chr11:5823888 | 7.00E-66 | dispersed | |
Clacu11g0604 | Clacu-Chr11:5823888 | Clacu11g0932 | Clacu-Chr11:9006056 | 3.70E-23 | dispersed | |
Clacu11g0604 | Clacu-Chr11:5823888 | Clacu06g1741 | Clacu-Chr6:28004319 | 2.10E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48622 | PF03106 | WRKY | 3.20E-25 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0604 | - | - | - | 0.0 |