Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0604 ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACCGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAACAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACCCTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 47.0 MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5823888 5828449 - ClG42_11g0060400.10 Clacu11g0604 261481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0604 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 MobiDBLite consensus disorder prediction 195 234 - -
Clacu11g0604 504 MobiDBLite consensus disorder prediction 326 369 - -
Clacu11g0604 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 FunFam WRKY transcription factor 33 377 443 - -
Clacu11g0604 504 MobiDBLite consensus disorder prediction 1 32 - -
Clacu11g0604 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 461 IPR044810 GO:0003700(InterPro)
Clacu11g0604 504 FunFam WRKY transcription factor 221 290 - -
Clacu11g0604 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 MobiDBLite consensus disorder prediction 281 311 - -
Clacu11g0604 504 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0604 504 Pfam WRKY DNA -binding domain 391 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2593 Clacu-Chr5:33778948 Clacu11g0604 Clacu-Chr11:5823888 1.20E-116 dispersed
Clacu06g1333 Clacu-Chr6:24244620 Clacu11g0604 Clacu-Chr11:5823888 8.30E-39 dispersed
Clacu10g0378 Clacu-Chr10:4791815 Clacu11g0604 Clacu-Chr11:5823888 4.30E-68 dispersed
Clacu10g0439 Clacu-Chr10:5455623 Clacu11g0604 Clacu-Chr11:5823888 9.80E-73 dispersed
Clacu10g1153 Clacu-Chr10:24150158 Clacu11g0604 Clacu-Chr11:5823888 5.80E-24 dispersed
Clacu10g2036 Clacu-Chr10:33827897 Clacu11g0604 Clacu-Chr11:5823888 5.40E-48 dispersed
Clacu10g2214 Clacu-Chr10:35149086 Clacu11g0604 Clacu-Chr11:5823888 7.00E-66 dispersed
Clacu11g0604 Clacu-Chr11:5823888 Clacu11g0932 Clacu-Chr11:9006056 3.70E-23 dispersed
Clacu11g0604 Clacu-Chr11:5823888 Clacu06g1741 Clacu-Chr6:28004319 2.10E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48622 PF03106 WRKY 3.20E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0604 - - - 0.0