Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0608 ATGCCTTCTCTCCTCTCACCTTCTTCCATGTGGAGCGAGCTTTGCCTGAGGCCAACACCACCTCCACTCAATGCCACCGATGAAACCCCCGTCGAATGCTACGCCTGCACTCAAGTCGGCGTTCCAGCCTTCCACTCCACCAGCTGCGACCACGCTCACCAGCAACCCGAATGGGAAGCCTCCGCGGGTTCTTCCCTCGTTCCCATTCAACCCACCAAACCCTCCCCGTCTCGCCGCCCCGCACTGCCACATCCTTCCGGTTGCTTCGGCACCGTTCTCGACCCGAGAACCAAGCCGGTTCAAAGATGGAACCGGGTTCTGTTATTGGCCCGTGGAATGGCTCTCGCTGTTGATCCTCTTTACTTCTACGCTCTGTCTATCGGAAGAGGAGGCTCCCCCTGCCTCTACATGGACGGTGGATTGGCCGCCGTCGTCACCGTCCTCCGCACGTGCCTCGATTTCGTTCACTTGTGGCACGTTTGGCTTCAATTCCGCCTCGCTTACGTGTCCAAAGAGAGTATGGTGATTGGCTGTGGGAAGCTCGTGTGGGACGCACGTGCTATCGCCTCTCATTACGTTCGTTCCTTCAAAGGCTTCTGGTTTGATGCCTTTGTCATCCTCCCTGTTCCTCAGATTGTTTATTGGTTTGTTTTACCAAAACTGATCAGAGAAGAGAGAATAAAACTTATAATGACAGTTGTCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTCACTGGATACATCTTCGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCTTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAACGAGTTGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAATCTATCTCTGTCTTGCTCTGAGGAGGTGTGTTATCAGTTTCTCTCATCAGCGACAACAATTGAAAGTTCGTGTGGTCGTAATTCGACTGCTACATTTAGGAAGCCACTATGCTTGGATGTTAAAGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCCAGCAATTCAGTAGCGGTCAAAATCCTTTATCCCATCTTTTGGGGATTAATGACTCTCAGCACCTTTGGCAATGATCTGGAGCCTACCAGTAATTGGCTCGAAGTATGCTTCAGTATTTGCACGGTGCTAAGTGGACTGCTGCTTTTCACTCTTTTGATTGGTAATATCCAGGTTCTTTTGCACGCTGTCATGGCAAGGAGGCGGAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAGGCAACGAGTTCGACACTACGAACACCAAAGATGGGCAGCCATGGGCGGAGAAGATGAGATGGAACTAATCAATGATTTGCCCGAAGGTCTTCGAAGAGACATTAAACGTCATCTTTGTGTTGATCTAATCAGAAAGGTGCCTCTCTTCCAAAACCTGGAGGAGCTGATTCTAGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATTATCAGAGAAGGGGATCCTGTTCCAAGGATGTTGTTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTAAGCAAGGGTATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGATGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGGTACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTCGCGTGGCGTCGATACCGAAAGAGGATGAGACGGCCAGTGATAGCCGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2085 48.49 MPSLLSPSSMWSELCLRPTPPPLNATDETPVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPTKPSPSRRPALPHPSGCFGTVLDPRTKPVQRWNRVLLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLAAVVTVLRTCLDFVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARAIASHYVRSFKGFWFDAFVILPVPQIVYWFVLPKLIREERIKLIMTVVLLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSATTIESSCGRNSTATFRKPLCLDVKGPFAYGIYKWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRQRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLEELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5862014 5866420 - ClG42_11g0060800.10 Clacu11g0608 261485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0608 694 Gene3D - 137 431 - -
Clacu11g0608 694 SUPERFAMILY cAMP-binding domain-like 434 621 IPR018490 -
Clacu11g0608 694 MobiDBLite consensus disorder prediction 60 84 - -
Clacu11g0608 694 Gene3D Jelly Rolls 505 623 IPR014710 -
Clacu11g0608 694 ProSiteProfiles cAMP/cGMP binding motif profile. 507 586 IPR000595 -
Clacu11g0608 694 Gene3D Helix hairpin bin 433 498 - -
Clacu11g0608 694 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
Clacu11g0608 694 CDD CAP_ED 507 614 IPR000595 -
Clacu11g0608 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 661 - -
Clacu11g0608 694 SUPERFAMILY Voltage-gated potassium channels 95 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1700 Clacu-Chr7:31777533 Clacu11g0608 Clacu-Chr11:5862014 1.00E-194 dispersed
Clacu10g0627 Clacu-Chr10:8510796 Clacu11g0608 Clacu-Chr11:5862014 1.40E-184 dispersed
Clacu10g1459 Clacu-Chr10:27746792 Clacu11g0608 Clacu-Chr11:5862014 1.50E-104 dispersed
Clacu11g0608 Clacu-Chr11:5862014 Clacu10g1427 Clacu-Chr10:27418634 2.10E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0608 K05391 - csv:101203560 1331.62