Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0656 ATGGGAATGAAGAGAACTGAGGCTATTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCAACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTATTGTGCACACAATACCTACCAGGACATAGACCTAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1881 43.7 MGMKRTEAIVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6304090 6307562 - ClG42_11g0065600.10 Clacu11g0656 261533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0656 626 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Clacu11g0656 626 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515(InterPro)
Clacu11g0656 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Clacu11g0656 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Clacu11g0656 626 SUPERFAMILY L domain-like 35 305 - -
Clacu11g0656 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0656 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Clacu11g0656 626 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Clacu11g0656 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Clacu11g0656 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0656 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Clacu11g0656 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Clacu11g0656 626 Pfam Protein tyrosine and serine/threonine kinase 309 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0656 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Clacu11g0656 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Clacu11g0656 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Clacu11g0656 626 SMART serkin_6 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2521 Clacu-Chr5:33327045 Clacu11g0656 Clacu-Chr11:6304090 3.60E-230 dispersed
Clacu09g1579 Clacu-Chr9:27018344 Clacu11g0656 Clacu-Chr11:6304090 2.70E-120 dispersed
Clacu10g0924 Clacu-Chr10:19182386 Clacu11g0656 Clacu-Chr11:6304090 9.90E-132 dispersed
Clacu11g0656 Clacu-Chr11:6304090 Clacu11g0675 Clacu-Chr11:6517974 1.10E-72 dispersed
Clacu01g0744 Clacu-Chr1:8002800 Clacu11g0656 Clacu-Chr11:6304090 9.90E-220 transposed
Clacu01g2462 Clacu-Chr1:35090008 Clacu11g0656 Clacu-Chr11:6304090 6.10E-154 transposed
Clacu06g1366 Clacu-Chr6:24533775 Clacu11g0656 Clacu-Chr11:6304090 3.60E-185 transposed
Clacu08g1943 Clacu-Chr8:28435414 Clacu11g0656 Clacu-Chr11:6304090 6.40E-195 transposed
Clacu11g0656 Clacu-Chr11:6304090 Clacu06g1699 Clacu-Chr6:27661850 6.70E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73955 PF00069 Pkinase 5.80E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0656 - - - 0.0