Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0656 | ATGGGAATGAAGAGAACTGAGGCTATTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCAACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTATTGTGCACACAATACCTACCAGGACATAGACCTAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA | 1881 | 43.7 | MGMKRTEAIVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6304090 | 6307562 | - | ClG42_11g0065600.10 | Clacu11g0656 | 261533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0656 | 626 | Pfam | Leucine Rich Repeat | 101 | 123 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0656 | 626 | Pfam | Leucine rich repeat | 125 | 184 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0656 | 626 | Gene3D | Transferase(Phosphotransferase) domain 1 | 383 | 595 | - | - | |
Clacu11g0656 | 626 | FunFam | Somatic embryogenesis receptor kinase 1 | 275 | 382 | - | - | |
Clacu11g0656 | 626 | SUPERFAMILY | L domain-like | 35 | 305 | - | - | |
Clacu11g0656 | 626 | ProSiteProfiles | Protein kinase domain profile. | 306 | 561 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0656 | 626 | Gene3D | Phosphorylase Kinase; domain 1 | 275 | 382 | - | - | |
Clacu11g0656 | 626 | SUPERFAMILY | Protein kinase-like (PK-like) | 282 | 576 | IPR011009 | - | |
Clacu11g0656 | 626 | Gene3D | Ribonuclease Inhibitor | 33 | 215 | IPR032675 | - | |
Clacu11g0656 | 626 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 425 | 437 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0656 | 626 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 13 | 626 | - | - | |
Clacu11g0656 | 626 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 33 | 215 | - | - | |
Clacu11g0656 | 626 | Pfam | Protein tyrosine and serine/threonine kinase | 309 | 575 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0656 | 626 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 383 | 595 | - | - | |
Clacu11g0656 | 626 | ProSitePatterns | Protein kinases ATP-binding region signature. | 312 | 334 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0656 | 626 | Pfam | Leucine rich repeat N-terminal domain | 34 | 73 | IPR013210 | - | |
Clacu11g0656 | 626 | SMART | serkin_6 | 306 | 575 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2521 | Clacu-Chr5:33327045 | Clacu11g0656 | Clacu-Chr11:6304090 | 3.60E-230 | dispersed | |
Clacu09g1579 | Clacu-Chr9:27018344 | Clacu11g0656 | Clacu-Chr11:6304090 | 2.70E-120 | dispersed | |
Clacu10g0924 | Clacu-Chr10:19182386 | Clacu11g0656 | Clacu-Chr11:6304090 | 9.90E-132 | dispersed | |
Clacu11g0656 | Clacu-Chr11:6304090 | Clacu11g0675 | Clacu-Chr11:6517974 | 1.10E-72 | dispersed | |
Clacu01g0744 | Clacu-Chr1:8002800 | Clacu11g0656 | Clacu-Chr11:6304090 | 9.90E-220 | transposed | |
Clacu01g2462 | Clacu-Chr1:35090008 | Clacu11g0656 | Clacu-Chr11:6304090 | 6.10E-154 | transposed | |
Clacu06g1366 | Clacu-Chr6:24533775 | Clacu11g0656 | Clacu-Chr11:6304090 | 3.60E-185 | transposed | |
Clacu08g1943 | Clacu-Chr8:28435414 | Clacu11g0656 | Clacu-Chr11:6304090 | 6.40E-195 | transposed | |
Clacu11g0656 | Clacu-Chr11:6304090 | Clacu06g1699 | Clacu-Chr6:27661850 | 6.70E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73955 | PF00069 | Pkinase | 5.80E-44 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0656 | - | - | - | 0.0 |