Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0675 | ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCGGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTCGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCCACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCACCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTCCTTCTGATTCTCAAACTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCAGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAATAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATAGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTCGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGAACGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA | 2334 | 48.11 | MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPSPPAGSPPSPPQSSPSPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPPSDSQTPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVTPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFVQKRKRRKKNIPYTIASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSERDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI | 777 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6517974 | 6523877 | + | ClG42_11g0067500.10 | Clacu11g0675 | 261552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0675 | 777 | Gene3D | Phosphorylase Kinase; domain 1 | 391 | 495 | - | - | |
Clacu11g0675 | 777 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 540 | 552 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0675 | 777 | Gene3D | Transferase(Phosphotransferase) domain 1 | 496 | 708 | - | - | |
Clacu11g0675 | 777 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 393 | 495 | - | - | |
Clacu11g0675 | 777 | SUPERFAMILY | Protein kinase-like (PK-like) | 403 | 693 | IPR011009 | - | |
Clacu11g0675 | 777 | SMART | serkin_6 | 420 | 676 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0675 | 777 | MobiDBLite | consensus disorder prediction | 278 | 313 | - | - | |
Clacu11g0675 | 777 | ProSiteProfiles | Protein kinase domain profile. | 420 | 681 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0675 | 777 | MobiDBLite | consensus disorder prediction | 12 | 53 | - | - | |
Clacu11g0675 | 777 | FunFam | proline-rich receptor-like protein kinase PERK8 | 496 | 708 | - | - | |
Clacu11g0675 | 777 | MobiDBLite | consensus disorder prediction | 750 | 777 | - | - | |
Clacu11g0675 | 777 | MobiDBLite | consensus disorder prediction | 739 | 777 | - | - | |
Clacu11g0675 | 777 | MobiDBLite | consensus disorder prediction | 54 | 277 | - | - | |
Clacu11g0675 | 777 | ProSitePatterns | Protein kinases ATP-binding region signature. | 426 | 448 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0675 | 777 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 304 | 729 | IPR047117 | - | |
Clacu11g0675 | 777 | MobiDBLite | consensus disorder prediction | 1 | 313 | - | - | |
Clacu11g0675 | 777 | Pfam | Protein tyrosine and serine/threonine kinase | 423 | 693 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0675 | 777 | CDD | STKc_IRAK | 426 | 696 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2181 | Clacu-Chr2:34980623 | Clacu11g0675 | Clacu-Chr11:6517974 | 6.80E-66 | dispersed | |
Clacu05g2516 | Clacu-Chr5:33270190 | Clacu11g0675 | Clacu-Chr11:6517974 | 2.00E-147 | dispersed | |
Clacu09g2270 | Clacu-Chr9:37442004 | Clacu11g0675 | Clacu-Chr11:6517974 | 2.60E-78 | dispersed | |
Clacu10g2252 | Clacu-Chr10:35437174 | Clacu11g0675 | Clacu-Chr11:6517974 | 1.40E-71 | dispersed | |
Clacu11g0235 | Clacu-Chr11:2115426 | Clacu11g0675 | Clacu-Chr11:6517974 | 5.10E-73 | dispersed | |
Clacu11g0593 | Clacu-Chr11:5664796 | Clacu11g0675 | Clacu-Chr11:6517974 | 1.70E-122 | dispersed | |
Clacu11g0656 | Clacu-Chr11:6304090 | Clacu11g0675 | Clacu-Chr11:6517974 | 1.10E-72 | dispersed | |
Clacu11g0675 | Clacu-Chr11:6517974 | Clacu11g2056 | Clacu-Chr11:31513777 | 4.70E-78 | dispersed | |
Clacu11g1417 | Clacu-Chr11:25017642 | Clacu11g0675 | Clacu-Chr11:6517974 | 3.10E-69 | dispersed | |
Clacu11g1488 | Clacu-Chr11:26026889 | Clacu11g0675 | Clacu-Chr11:6517974 | 7.40E-66 | dispersed | |
Clacu02g0219 | Clacu-Chr2:2078067 | Clacu11g0675 | Clacu-Chr11:6517974 | 5.70E-65 | transposed | |
Clacu05g2733 | Clacu-Chr5:34834044 | Clacu11g0675 | Clacu-Chr11:6517974 | 4.30E-140 | transposed | |
Clacu11g1532 | Clacu-Chr11:26454439 | Clacu11g0675 | Clacu-Chr11:6517974 | 1.10E-42 | transposed | |
Clacu11g0675 | Clacu-Chr11:6517974 | Clacu04g0672 | Clacu-Chr4:20638022 | 6.30E-57 | wgd | |
Clacu11g0675 | Clacu-Chr11:6517974 | Clacu07g1635 | Clacu-Chr7:30916047 | 2.50E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73956 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-45 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0675 | - | - | - | 0.0 |