Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0675 ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCGGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTCGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCCACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCACCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTCCTTCTGATTCTCAAACTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCAGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAATAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATAGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTCGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGAACGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA 2334 48.11 MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPSPPAGSPPSPPQSSPSPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPPSDSQTPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVTPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFVQKRKRRKKNIPYTIASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSERDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6517974 6523877 + ClG42_11g0067500.10 Clacu11g0675 261552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0675 777 Gene3D Phosphorylase Kinase; domain 1 391 495 - -
Clacu11g0675 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0675 777 Gene3D Transferase(Phosphotransferase) domain 1 496 708 - -
Clacu11g0675 777 FunFam Proline-rich receptor-like protein kinase PERK8 393 495 - -
Clacu11g0675 777 SUPERFAMILY Protein kinase-like (PK-like) 403 693 IPR011009 -
Clacu11g0675 777 SMART serkin_6 420 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0675 777 MobiDBLite consensus disorder prediction 278 313 - -
Clacu11g0675 777 ProSiteProfiles Protein kinase domain profile. 420 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0675 777 MobiDBLite consensus disorder prediction 12 53 - -
Clacu11g0675 777 FunFam proline-rich receptor-like protein kinase PERK8 496 708 - -
Clacu11g0675 777 MobiDBLite consensus disorder prediction 750 777 - -
Clacu11g0675 777 MobiDBLite consensus disorder prediction 739 777 - -
Clacu11g0675 777 MobiDBLite consensus disorder prediction 54 277 - -
Clacu11g0675 777 ProSitePatterns Protein kinases ATP-binding region signature. 426 448 IPR017441 GO:0005524(InterPro)
Clacu11g0675 777 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 304 729 IPR047117 -
Clacu11g0675 777 MobiDBLite consensus disorder prediction 1 313 - -
Clacu11g0675 777 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0675 777 CDD STKc_IRAK 426 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2181 Clacu-Chr2:34980623 Clacu11g0675 Clacu-Chr11:6517974 6.80E-66 dispersed
Clacu05g2516 Clacu-Chr5:33270190 Clacu11g0675 Clacu-Chr11:6517974 2.00E-147 dispersed
Clacu09g2270 Clacu-Chr9:37442004 Clacu11g0675 Clacu-Chr11:6517974 2.60E-78 dispersed
Clacu10g2252 Clacu-Chr10:35437174 Clacu11g0675 Clacu-Chr11:6517974 1.40E-71 dispersed
Clacu11g0235 Clacu-Chr11:2115426 Clacu11g0675 Clacu-Chr11:6517974 5.10E-73 dispersed
Clacu11g0593 Clacu-Chr11:5664796 Clacu11g0675 Clacu-Chr11:6517974 1.70E-122 dispersed
Clacu11g0656 Clacu-Chr11:6304090 Clacu11g0675 Clacu-Chr11:6517974 1.10E-72 dispersed
Clacu11g0675 Clacu-Chr11:6517974 Clacu11g2056 Clacu-Chr11:31513777 4.70E-78 dispersed
Clacu11g1417 Clacu-Chr11:25017642 Clacu11g0675 Clacu-Chr11:6517974 3.10E-69 dispersed
Clacu11g1488 Clacu-Chr11:26026889 Clacu11g0675 Clacu-Chr11:6517974 7.40E-66 dispersed
Clacu02g0219 Clacu-Chr2:2078067 Clacu11g0675 Clacu-Chr11:6517974 5.70E-65 transposed
Clacu05g2733 Clacu-Chr5:34834044 Clacu11g0675 Clacu-Chr11:6517974 4.30E-140 transposed
Clacu11g1532 Clacu-Chr11:26454439 Clacu11g0675 Clacu-Chr11:6517974 1.10E-42 transposed
Clacu11g0675 Clacu-Chr11:6517974 Clacu04g0672 Clacu-Chr4:20638022 6.30E-57 wgd
Clacu11g0675 Clacu-Chr11:6517974 Clacu07g1635 Clacu-Chr7:30916047 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73956 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0675 - - - 0.0