Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0704 ATGAAAAGAAGAAAAAAAATTTATCAAAACCTTCTGTTTTGCAAATCAGCCGTGCGACACCCCCCTTCTCGCGAGTTTTCCCTCACCACACGCTGCGCCGCACGAAGCTTCTCCGCCCACCGCCGCCGATCGCTTGCCTCCTGGCCTCCGTCCTCGCCGCCGTCTTCGATCGCCGGCCGTCCAAGCACAGCTGGACGTTCGCCACTATTTGAAGCGACCGGAGAACTACTAGGAAAACCAAATACCATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAACATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTCCGTGGAGTTCTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTTGAAAAACTGATCAAGGAGCTTCCAAGTGCACCTGCTGATGGCTCAAACGGAACCATGAATTTAACAGATAAAAGTGCATTAAGTAATGGTGCTTCTTTACCACACATGGAGAACGGAACAAATCTTAGAGAAACACAGAGTATGCTCTTGGAAAGAATTTCCAGTGAAATGAATCGGCTGAAATTTTACATCGCTCATGCACAGGATCTTCCCTTCATTCAAAATATGGACAAGAGGATTCAGAGTGCCAGCCTGTTGCTGGACACGAGCTTGGGACATTGTTTTGTTGATGGACTTGCACATCATGATGAAAATGCTATTTACAATTGCCTACGTGCCTATGCTGCCATAGATAACACCACAAGTGCAGAAGAAATTTTTCGCAGTACTGTTGTATCACCAGCAATTCATAAAGTTTTTCCACATGGAGTTTCTGGCATGGAGGCTGGATCATCTGATGATGATTTGGAGAATGATTACAAGCAAATGAAGCAATATATTGATAAAGACTGCAAATTTTTGTTAGAAATATCTGCTACAGAAAACTCAGGACTACATGTATTTGATTTCTTGGCTAATTCAATCCTGAAAGAGGTTCTCTCTGCTATCCAAAAGGCAAAACCAGGTGCATTTTCCCCAGGAAGACCTACTGAATTCTTAAAGAACTACAAGTCGAGCCTTGATTTCTTGGCGTACTTGGAAGGCTATTGTCCATCCAGATCTGCTGTTGCTAAATTTCGAGCTGCATCTGTGTATAATGAGTTCATGAAGCAATGGAATATTGGGGTTTATTTTTCTCTGAGGCTTCAGGAAATAGCTGGGGCTTTGGATTCGTCCCTTTCAGCACCCATTCTAACCCCCATACAAACTTCACCTTCTGGCGGGGGAAATAATCAGGATCTAACATTAAAGCAGAGTGTGATGCTTTTAGACTGTCTGACAGCATGCTGGAGAGACGATGTTCTCGTCCTTTCTTGTTCTGACAAGTTTCTTCGTCTATCTTTGCAGCTCCTTTCAAGATACTCCAACTGGTTGTCATCTGGTCTAGCTGCCCGTAAGACGGGGACAGGCTCCCATCCAGGTTCTGAATGGGCTGTAGCAGCTGCCCCAGATGATTTGATATATATAATCCATGACCTTGGTTATCTAGCCACGGTGGTAGCTGGTAATTTTTTGGAAACTGTACTTCAGCTCCTATCGTCATGCCCTGCAGATGTTCTCAATTCAGTAAAGCAGAGCATTTTGCACAGTGGAAAGTCATTGAATAATTTAATGCCCAAAGTTACTGGTGCCATAGTTGCTTCACTGGTTGAGAAGTCTGTTGAGGACTTGAGACAGCTGAAGGGTATAACAGCAACATACAGGATGACCAATAAACCACTACCTGTAAGGCATTCACCCTATGTATCAGGGTTGCTACGCCCCTTAAAGGCCTTATTGGATGGAGAGAGGGCGTCAACTTTTTTGACAACGGAAACAAGGAATGCACTGCTGATCGATGCTGTGACAGAGATTACTGCTCGTTATTATGAGCAAGCAGCTGATCTTGTTAGCTTGGCTAGGAAAACAGATTCGTCACTCCAGAAAATCCGGCAGGGAGTACAAAGACGAGCTGGAGCAAGCTCAGATGTTTCAGACCATAACATCTCTGACACTGACAAGATTTGCATGCAACTCTTTCTTGATATTCAGGAGTATGGTCGCAACCTTTCAGCCCTTGGGGTTGAAGCAGCGACACACCGCCCGCTGCTACAAAATTCCATCTCGAGAGAGAAATCGGATCACTTTGAAATGGCGGTCGCTTTCCATGATGTCAAGTCTGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCGATCTCCAAACCCGTTTCCAGTGAATATGTTAACGTGTCTAGGTGGAGTAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTTGATGCAGTTGCAACCCCACCAGCTGCAGATGCAAAGGCTGCTGATGACGATGATGACGACGACATGGACCTATTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTGCCATTAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGACATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATACGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTAGCTGTGACATCGTGGCCTTCAACAAAATATAATTTCTGTTCGTCAGAACCAAAGACAGCTGGTTTCAAAGATGTTGCTGAGTTTGAGGAAGATGTTTAG 3171 45.29 MKRRKKIYQNLLFCKSAVRHPPSREFSLTTRCAARSFSAHRRRSLASWPPSSPPSSIAGRPSTAGRSPLFEATGELLGKPNTMADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAPADGSNGTMNLTDKSALSNGASLPHMENGTNLRETQSMLLERISSEMNRLKFYIAHAQDLPFIQNMDKRIQSASLLLDTSLGHCFVDGLAHHDENAIYNCLRAYAAIDNTTSAEEIFRSTVVSPAIHKVFPHGVSGMEAGSSDDDLENDYKQMKQYIDKDCKFLLEISATENSGLHVFDFLANSILKEVLSAIQKAKPGAFSPGRPTEFLKNYKSSLDFLAYLEGYCPSRSAVAKFRAASVYNEFMKQWNIGVYFSLRLQEIAGALDSSLSAPILTPIQTSPSGGGNNQDLTLKQSVMLLDCLTACWRDDVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKTGTGSHPGSEWAVAAAPDDLIYIIHDLGYLATVVAGNFLETVLQLLSSCPADVLNSVKQSILHSGKSLNNLMPKVTGAIVASLVEKSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKALLDGERASTFLTTETRNALLIDAVTEITARYYEQAADLVSLARKTDSSLQKIRQGVQRRAGASSDVSDHNISDTDKICMQLFLDIQEYGRNLSALGVEAATHRPLLQNSISREKSDHFEMAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEAISKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKFDAVATPPAADAKAADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVAVTSWPSTKYNFCSSEPKTAGFKDVAEFEEDV 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6896587 6911833 + ClG42_11g0070400.10 Clacu11g0704 261581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0704 1056 MobiDBLite consensus disorder prediction 924 938 - -
Clacu11g0704 1056 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 93 815 IPR009316 GO:0006891(PANTHER)|GO:0007030(PANTHER)|GO:0007030(InterPro)|GO:0015031(InterPro)|GO:0016020(InterPro)|GO:0017119(PANTHER)
Clacu11g0704 1056 FunFam Elongation factor 1-beta 1 like 959 1038 - -
Clacu11g0704 1056 Gene3D - 813 907 - -
Clacu11g0704 1056 Pfam COG2 N-terminal 107 181 IPR024602 -
Clacu11g0704 1056 MobiDBLite consensus disorder prediction 918 942 - -
Clacu11g0704 1056 SUPERFAMILY eEF-1beta-like 962 1027 IPR036219 -
Clacu11g0704 1056 MobiDBLite consensus disorder prediction 44 64 - -
Clacu11g0704 1056 FunFam Elongation factor 1-delta 1 835 910 - -
Clacu11g0704 1056 CDD EF1B 963 1024 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Clacu11g0704 1056 Coils Coil 937 957 - -
Clacu11g0704 1056 Pfam EF-1 guanine nucleotide exchange domain 967 1026 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Clacu11g0704 1056 SMART EF1_GNE_2 965 1055 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Clacu11g0704 1056 Pfam COG complex component, COG2, C-terminal 492 798 IPR024603 -
Clacu11g0704 1056 MobiDBLite consensus disorder prediction 48 62 - -
Clacu11g0704 1056 SUPERFAMILY GST C-terminal domain-like 840 901 IPR036282 -
Clacu11g0704 1056 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 929 937 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Clacu11g0704 1056 Gene3D - 958 1042 IPR014717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0704 K20289 - csv:101215350 1365.52