Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0710 ATGAAAAGGCTACTGGGGTTGTTCTTCTTGTTCGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGATCCTAAAGGGAAACTTGCTTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCAATCTTGATGGCTTTTCTCTCAATGGCAGGCTTGGCCGTGGTCTTCTTCAGTTGCAGTTTCTTCGTAAACTCTCTCTTTCGAACAACAATCTTACTGGAAATTTAAGTCCTAATAATGCTCGCTTTGAAAATCTTCGAGTGGTCGATTTAAGCGGCAACGGTTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAATTTTCAGGGAATATCCCGGAAAGTTTGGGCTCTTGTTCCAGTCTTGCTGCTGTTAATTTGTCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTGACCGGGCTTCGATCTTTGGATTTGTCTGATAATGTGTTAGAAGGTGAAATTCCACCGGAAGTGAAGGGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGTGACGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGAAACTCATTTGAAGGGAAGGTTCCTGAATGGATTGGTGGAATGGATGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATTTTTCTGAAAATGGTTTAACTGGTAGCTTGGCTGAATCCATACTTCCTTCTCAAAACCTTTCAGCCATGGAGCCCGGCCGTGGTTCTCTCACTGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAAGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCACTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAACTTGCAGGTGTTAAACCTATGTAAGAACTCATTTGTTGGGACTGTTCCAGAGAGTATTGGAGGCTTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAACCATTCCCGAAACACTCGGCGGAGACATATCATTGAAAGAAGTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAAATCAATTGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCACTGCCAAAACAGTTGGCCAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCGCAACAATCTGCAAGGCGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCTCCTTCCTCTGTGGCTGGAAATCCTTCCATTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGCGTCCTCCCAAAGCCTATTGTTCTCAATCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCTATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCAATCACCGTCATTAACCTCCATGTTCGATCGTCTGCAAATCGTCCTGAAGCAGCCATCACGTTCTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTCGTCATGTTCTCGGGAGAGCCTGACTTTAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGTGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATCCGGTTGCAATAAAAAAGCTCACCGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACACCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTTGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTCCTGATTGATAGTTCAGGTGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAGAGCGCACTCGGATACATGGCACCTGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGGTTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTAGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATCAGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATTTGCACTTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.01 MKRLLGLFFLFVVVPVLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKFSGNIPESLGSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPPEVKGMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNSFEGKVPEWIGGMDGLEILDLSGNRFSGPVPSSFGNLQKLKVLNFSENGLTGSLAESILPSQNLSAMEPGRGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNALSGEISPDIGILSNLQVLNLCKNSFVGTVPESIGGLKALVFLDLSENQLNGTIPETLGGDISLKEVRLEKNLLEGEVPKSIGNCSSLVTLDISENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISRNNLQGELPAGGFFNTISPSSVAGNPSICGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6968293 6971408 + ClG42_11g0071000.10 Clacu11g0710 261587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0710 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 305 574 - -
Clacu11g0710 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Clacu11g0710 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Clacu11g0710 964 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Clacu11g0710 964 SMART LRR_typ_2 428 452 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 524 548 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 213 237 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 500 523 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 380 404 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 189 212 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 285 308 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 116 140 IPR003591 -
Clacu11g0710 964 SMART LRR_typ_2 309 333 IPR003591 -
Clacu11g0710 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 757 - -
Clacu11g0710 964 PRINTS Leucine-rich repeat signature 192 205 - -
Clacu11g0710 964 PRINTS Leucine-rich repeat signature 380 393 - -
Clacu11g0710 964 PANTHER OS05G0588300 PROTEIN 375 470 IPR050994 -
Clacu11g0710 964 SUPERFAMILY RNI-like 249 549 - -
Clacu11g0710 964 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Pfam Leucine Rich Repeat 478 500 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 Pfam Leucine Rich Repeat 95 111 IPR001611 GO:0005515(InterPro)
Clacu11g0710 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 758 959 - -
Clacu11g0710 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Clacu11g0710 964 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Clacu11g0710 964 Pfam Protein tyrosine and serine/threonine kinase 683 949 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0710 964 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Clacu11g0710 964 SUPERFAMILY L domain-like 44 354 - -
Clacu11g0710 964 Gene3D Ribonuclease Inhibitor 284 573 IPR032675 -
Clacu11g0710 964 CDD STKc_IRAK 687 953 - -
Clacu11g0710 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0710 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 26 304 - -
Clacu11g0710 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0710 Clacu-Chr11:6968293 Clacu01g1511 Clacu-Chr1:27209011 4.70E-51 dispersed
Clacu07g1588 Clacu-Chr7:30504029 Clacu11g0710 Clacu-Chr11:6968293 7.10E-26 transposed
Clacu10g0324 Clacu-Chr10:4191880 Clacu11g0710 Clacu-Chr11:6968293 3.70E-87 transposed
Clacu10g2240 Clacu-Chr10:35341536 Clacu11g0710 Clacu-Chr11:6968293 2.70E-184 wgd
Clacu11g0710 Clacu-Chr11:6968293 Clacu07g0530 Clacu-Chr7:6831943 5.10E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73957 PF00069 Pkinase 3.00E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0710 - - - 0.0