Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0714 ATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAATTTGGCCAGACGTTCGAGGGAAGCCAATTCTAA 621 50.72 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGSQF 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7020692 7021522 + ClG42_11g0071400.10 Clacu11g0714 261591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0714 206 Gene3D - 113 206 IPR036749 -
Clacu11g0714 206 SMART dpbb_1 19 104 IPR007112 -
Clacu11g0714 206 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 114 IPR007112 -
Clacu11g0714 206 Pfam Expansin C-terminal domain 115 192 IPR007117 -
Clacu11g0714 206 Gene3D - 1 110 IPR036908 -
Clacu11g0714 206 PRINTS Expansin signature 41 52 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 113 125 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 89 102 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 160 181 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 14 28 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 72 89 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 125 146 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 189 205 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 PRINTS Expansin signature 53 63 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 SUPERFAMILY PHL pollen allergen 111 203 IPR036749 -
Clacu11g0714 206 FunFam Expansin 114 206 - -
Clacu11g0714 206 PANTHER EXPANSIN-A15 1 206 IPR002963 GO:0009664(InterPro)
Clacu11g0714 206 Pfam Lytic transglycolase 19 104 IPR009009 -
Clacu11g0714 206 SUPERFAMILY Barwin-like endoglucanases 1 132 IPR036908 -
Clacu11g0714 206 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 124 203 IPR007117 -
Clacu11g0714 206 CDD DPBB_EXPA_N 1 109 - -
Clacu11g0714 206 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576(InterPro)
Clacu11g0714 206 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576(InterPro)
Clacu11g0714 206 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Clacu11g0714 206 PRINTS Expansin/Lol pI family signature 97 113 IPR007118 GO:0005576(InterPro)
Clacu11g0714 206 PRINTS Expansin/Lol pI family signature 151 165 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0742 Clacu-Chr7:17802650 Clacu11g0714 Clacu-Chr11:7020692 2.60E-36 dispersed
Clacu08g1577 Clacu-Chr8:25590918 Clacu11g0714 Clacu-Chr11:7020692 1.30E-85 dispersed
Clacu09g1856 Clacu-Chr9:33317282 Clacu11g0714 Clacu-Chr11:7020692 8.60E-93 dispersed
Clacu09g2002 Clacu-Chr9:34875415 Clacu11g0714 Clacu-Chr11:7020692 7.60E-10 dispersed
Clacu10g0339 Clacu-Chr10:4289137 Clacu11g0714 Clacu-Chr11:7020692 1.40E-45 dispersed
Clacu10g0664 Clacu-Chr10:9307417 Clacu11g0714 Clacu-Chr11:7020692 2.10E-61 dispersed
Clacu11g0714 Clacu-Chr11:7020692 Clacu11g1130 Clacu-Chr11:15813750 1.00E-43 dispersed
Clacu11g0714 Clacu-Chr11:7020692 Clacu07g0524 Clacu-Chr7:6700707 5.00E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0714 - - - 0.0