Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0724 ATGTCAAGAGAAAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTTCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGTTAA 687 42.79 MSRERELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHISNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7107804 7110271 + ClG42_11g0072400.10 Clacu11g0724 261601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0724 228 Pfam Lateral organ boundaries (LOB) domain 49 145 IPR004883 -
Clacu11g0724 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 171 - -
Clacu11g0724 228 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Clacu11g0724 228 MobiDBLite consensus disorder prediction 172 193 - -
Clacu11g0724 228 MobiDBLite consensus disorder prediction 169 193 - -
Clacu11g0724 228 Coils Coil 128 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0922 Clacu-Chr5:8156885 Clacu11g0724 Clacu-Chr11:7107804 2.90E-29 dispersed
Clacu09g2068 Clacu-Chr9:35475937 Clacu11g0724 Clacu-Chr11:7107804 2.00E-28 dispersed
Clacu11g0724 Clacu-Chr11:7107804 Clacu11g1302 Clacu-Chr11:22050335 7.20E-35 dispersed
Clacu11g0724 Clacu-Chr11:7107804 Clacu07g0508 Clacu-Chr7:6278713 6.90E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48628 PF03195 LOB 1.90E-40 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0724 - - - 0.0