Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0745 ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCACAGTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGTCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCCCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATATTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGATCTTAGAGAAGCAAGTGAAGGATGAAGATCTTGATGCTGTATATCGTGATTGGAGCAATGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAACCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTAAAGGGCAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCGGCGGATGTAGACTATGGATTTGATTTTTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA 1245 46.59 MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGHSARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRSQLVPSNIKIEDGEGESRTGDHSDGTATPMPLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPMDEIFEPRTGNQADHMAMPMILEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLNLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7286009 7287836 + ClG42_11g0074500.10 Clacu11g0745 261622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0745 414 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0745 414 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0745 414 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0745 414 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Clacu11g0745 414 MobiDBLite consensus disorder prediction 150 171 - -
Clacu11g0745 414 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0745 414 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0745 414 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 311 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Clacu11g0745 414 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Clacu11g0745 414 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0745 414 MobiDBLite consensus disorder prediction 188 212 - -
Clacu11g0745 414 Pfam AP2 domain 70 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2032 Clacu-Chr5:29294067 Clacu11g0745 Clacu-Chr11:7286009 2.50E-30 dispersed
Clacu08g1628 Clacu-Chr8:26057195 Clacu11g0745 Clacu-Chr11:7286009 2.20E-30 dispersed
Clacu10g1700 Clacu-Chr10:30492319 Clacu11g0745 Clacu-Chr11:7286009 2.60E-25 dispersed
Clacu11g0745 Clacu-Chr11:7286009 Clacu11g1719 Clacu-Chr11:28458610 7.40E-22 dispersed
Clacu11g0745 Clacu-Chr11:7286009 Clacu11g0752 Clacu-Chr11:7364568 5.90E-19 proximal
Clacu02g1160 Clacu-Chr2:22983629 Clacu11g0745 Clacu-Chr11:7286009 2.20E-49 transposed
Clacu11g0745 Clacu-Chr11:7286009 Clacu04g0726 Clacu-Chr4:21492084 3.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48630 PF00847 AP2 4.10E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0745 K09286 - csv:101215431 640.188