Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0751 ATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCACAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATTGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA 501 40.92 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7346825 7347325 + ClG42_11g0075100.10 Clacu11g0751 261628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0751 166 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Clacu11g0751 166 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Clacu11g0751 166 Coils Coil 91 118 - -
Clacu11g0751 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1381 Clacu-Chr10:26924184 Clacu11g0751 Clacu-Chr11:7346825 2.50E-38 dispersed
Clacu10g1569 Clacu-Chr10:28966015 Clacu11g0751 Clacu-Chr11:7346825 4.90E-23 dispersed
Clacu11g0751 Clacu-Chr11:7346825 Clacu11g1302 Clacu-Chr11:22050335 1.90E-37 dispersed
Clacu11g0751 Clacu-Chr11:7346825 Clacu07g0465 Clacu-Chr7:5665260 2.90E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48631 PF03195 LOB 1.20E-38 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0751 - - - 0.0