Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0767 ATGGCATTGGTATTTGATTTCATGGTTAATGGGAACCTAGAGAAGTGGTTGCATCCAGTTGATAATTTGAACCAGGAAGAGGAGCAAAGGTATTTAAATATTATGCAAAGACTAAATATTGCCATTGACGTGGCTAGTGCTCTAGATTATCTGCATAATGGTAGCCACATACCAATAGCTCACTGTGACTTAAAGCCAAGCAATGTTCTTTTGGATGCTAACATGACTGCTCATGTTGGAGATTTTGGATTGGCAAAATATATGGTTGGAACTTCCTTCCAGAACAAATCAACTGAAAGTGGATCCATCAGCATACGAGGCACGATTGGATATGCTCCTCCAGAGTATGCCATGGGAAGTAAGGTTTCGACGCATGGTGATGTGTATAGTTATGGCATCTTATTGTTGGAGATGTTCACTGGAAAGAGTCCAACTGATAATATGTTCAAAGATGGCTTAACCTTGAACAACTACGTTCTTACAGCCTTACCTGAAAGGGTACAAGAAATAGCAGACCCAACAATGGGCCTTCAAGCACTGAATGGAATAAGCAACAATAATAACATGCTTAACAACAACCATGTTCTTGAGGCTTTACCCGATCAGTTAGAACAAATGGGAGATCCAAAATTGAGCCTTCAAGAACGGGAGGGAACAGGAAACCAAAATCTTATGGTTCAGGCTAATCAATCTCTCAGAATTAAAGAGTGCTTGTTTTCAATTTTCAGCATAGGAGTTGTATGTTCTGCCCAAATGCCTAGTGAGAGAATGAATATCAGTGATGTTGTTTCCCAACTATGCCTTACAAGAGAAAAATTTTCATAG 825 39.52 MALVFDFMVNGNLEKWLHPVDNLNQEEEQRYLNIMQRLNIAIDVASALDYLHNGSHIPIAHCDLKPSNVLLDANMTAHVGDFGLAKYMVGTSFQNKSTESGSISIRGTIGYAPPEYAMGSKVSTHGDVYSYGILLLEMFTGKSPTDNMFKDGLTLNNYVLTALPERVQEIADPTMGLQALNGISNNNNMLNNNHVLEALPDQLEQMGDPKLSLQEREGTGNQNLMVQANQSLRIKECLFSIFSIGVVCSAQMPSERMNISDVVSQLCLTREKFS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7526767 7527818 - ClG42_11g0076700.10 Clacu11g0767 261644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0767 274 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 8 196 - -
Clacu11g0767 274 Gene3D Transferase(Phosphotransferase) domain 1 8 273 - -
Clacu11g0767 274 SMART serkin_6 1 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0767 274 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
Clacu11g0767 274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 270 IPR051564 GO:0016020(PANTHER)
Clacu11g0767 274 Pfam Protein kinase domain 1 148 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0767 274 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0767 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0767 Clacu-Chr11:7526767 Clacu11g0770 Clacu-Chr11:7547377 1.00E-96 dispersed
Clacu11g0767 Clacu-Chr11:7526767 Clacu11g0769 Clacu-Chr11:7534720 5.80E-124 proximal
Clacu10g2161 Clacu-Chr10:34775748 Clacu11g0767 Clacu-Chr11:7526767 1.50E-51 wgd
Clacu11g0767 Clacu-Chr11:7526767 Clacu07g0423 Clacu-Chr7:4918683 9.90E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73959 PF00069 Pkinase 2.30E-25 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0767 - - - 0.0