Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0794 ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGATTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTTGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA 795 47.67 MTTIQNSHVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSDCSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADLTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYDWALYCFKENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7839161 7842249 + ClG42_11g0079400.10 Clacu11g0794 261671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0794 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Clacu11g0794 264 PANTHER ZINC FINGER, RING-CH-TYPE 17 197 - -
Clacu11g0794 264 SUPERFAMILY RING/U-box 89 146 - -
Clacu11g0794 264 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270(InterPro)
Clacu11g0794 264 SMART ringv_2 91 144 IPR011016 GO:0008270(InterPro)
Clacu11g0794 264 Pfam RING-variant domain 92 143 IPR011016 GO:0008270(InterPro)
Clacu11g0794 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0794 Clacu-Chr11:7839161 Clacu11g1852 Clacu-Chr11:29657429 2.10E-09 dispersed
Clacu04g0228 Clacu-Chr4:7217422 Clacu11g0794 Clacu-Chr11:7839161 6.00E-09 transposed
Clacu10g2134 Clacu-Chr10:34544554 Clacu11g0794 Clacu-Chr11:7839161 7.70E-47 wgd
Clacu11g0794 Clacu-Chr11:7839161 Clacu03g0101 Clacu-Chr3:1224385 2.30E-29 wgd
Clacu11g0794 Clacu-Chr11:7839161 Clacu04g0794 Clacu-Chr4:22292563 4.30E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0794 - - - 0.0