Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0794 | ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGATTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTTGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA | 795 | 47.67 | MTTIQNSHVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSDCSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADLTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYDWALYCFKENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7839161 | 7842249 | + | ClG42_11g0079400.10 | Clacu11g0794 | 261671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0794 | 264 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 152 | IPR013083 | - | |
Clacu11g0794 | 264 | PANTHER | ZINC FINGER, RING-CH-TYPE | 17 | 197 | - | - | |
Clacu11g0794 | 264 | SUPERFAMILY | RING/U-box | 89 | 146 | - | - | |
Clacu11g0794 | 264 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 84 | 150 | IPR011016 | GO:0008270(InterPro) | |
Clacu11g0794 | 264 | SMART | ringv_2 | 91 | 144 | IPR011016 | GO:0008270(InterPro) | |
Clacu11g0794 | 264 | Pfam | RING-variant domain | 92 | 143 | IPR011016 | GO:0008270(InterPro) | |
Clacu11g0794 | 264 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu11g0794 | Clacu-Chr11:7839161 | Clacu11g1852 | Clacu-Chr11:29657429 | 2.10E-09 | dispersed | |
Clacu04g0228 | Clacu-Chr4:7217422 | Clacu11g0794 | Clacu-Chr11:7839161 | 6.00E-09 | transposed | |
Clacu10g2134 | Clacu-Chr10:34544554 | Clacu11g0794 | Clacu-Chr11:7839161 | 7.70E-47 | wgd | |
Clacu11g0794 | Clacu-Chr11:7839161 | Clacu03g0101 | Clacu-Chr3:1224385 | 2.30E-29 | wgd | |
Clacu11g0794 | Clacu-Chr11:7839161 | Clacu04g0794 | Clacu-Chr4:22292563 | 4.30E-31 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0794 | - | - | - | 0.0 |