Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0813 ATGGCATCCATTTCGAAACGGCTACTCCTCTTCGCGGCGGCGCTACTCGCCACCGCTGAAATCGCAACCTCCATCACCCGATGCCCGGACTGCGGCGGCGCTTCCGTCCCCTATCCTCTGAGTACAAGCCCCACATGTGGGGACCAATCGTATAAGATCCGGTGCGACGCAGGCTCACTGAAATTCGACACGCTGAACAACACGTACCCGATCATCTCGATCAACCCGTCGATCCAACGGCTGGTGATTCAGCCCTCAAATTTCCTCCCGAACACGTGTGTGACAGCGGATATCGCTCACGACGGAATCAAATTGAACAGTAGTTTACCCTTCAACGTGACGAGCGGGAACACGATCCTGTACTTCAACTGTACGGATTCGCTTCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGTCTGTGCCATTCGTACATCAACGGGTCAAGAGGAGCGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCGGGTGGGTCGTCGAATTCGTACATGATTCGGGTGAGGGAATCGGGGTGTAGCGCGTACACGAGCTTTGTGAACTTGAACCCGAGTTTGGGAGTGGTTCCGTGGCCCGAACCCGGGTTGGAGCTGCAGTGGCTTTTGCCGAGGGAGCCGGTTTGTAATACGCAGGCTGATTGTGATGTGAACGCGGTTTGTGGTGTTGACCCGAGTGGGACGGCGTTGAGACGTTGTCTTTGTAATTCTGGGTTTGTGTGGGACCCTGTTGCTGGAATCTGCTCTCAAAATACGTGTCATGATCCTGATGGTTGTAGTACGCACCGAACTGCACTGATAGCTGGCATTGTATCCGGCGTGGGCGCGGCGTTGATCATCTCAACAATAGCAATGCTAGTGTACAATCGGCATAGAAGAGCGAAAGAAGCTCAAGATCGTTTAACAAAGGAGCGTGAAGCCATTCTGAATTCCAACGGCGGAGGCGGAAGGGCGGCAAAGATCTTCACTGGTAAAGAGATCAAGAGGGCCACCCACAACTTCTCCGTCGACCACCTTCTGGGTGTCGGCGGCTACGGTGAGGTCTACAAAGGCGTTCTCGGGGACGGAACCACCGTGGCCGTAAAGTGCGCCAAGCTCGGAAACGCAAAAGGGACCGACCAAGTCCTGAATGAGGTCCGAATCCTGTGCCAAGTTAACCACCGGAGTCTTGTCCGGCTCCTTGGCTGCTGCGTCGAACTAGAACAGCCAATTTTGGTGTACGAGTATATTCCCAACGGCACTCTTCTCGACCATTTACAAGGTATTAAAGACACAAGGTCACTATCATGGGAGGAACGACTCCGAATTGCGCAGGGCACAGCAGAGGGACTAGCATATCTTCATTTCTCAGCAGTTCCACCCATCTACCACCGAGACGTCAAATCTAGCAACATCCTCTTAGACCACAAGCTAATCCCCAAAGTTTCAGATTTCGGGCTCTCCCGATTGGCAGAAACAGATCTAAGCCATATCTCAACTTGCGCCCAAGGAACTCTAGGCTACCTGGACCCCGAGTACTATCGAAACTATCAATTGACGGACAAGAGCGACGTGTACAGCTTTGGAGTGGTTCTGCTTGAGCTATTGACATCACAAAAGGCCATCGACTTCGGTCGTGAGGCTGACGACGTCAACTTGGCAGTTTATGTGCAACGGCTGGTGGAGGAAGAGAGATTGGTGGATGCCATTGATCCGTGGCTGAAGAAGGGAGCTACAGATGTGGAGGTTGATACGATGAAGGCTTTGGGGTTCCTTGCAGTGGGGTGCTTGGAACAGAGAAGGCAGAACCGACCTTCTATGAAAGAAGTGGTGGAGGAGATTCAATACATCATTAGCATCGCCATTGCTAAGGCTTAA 1878 53.41 MASISKRLLLFAAALLATAEIATSITRCPDCGGASVPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIISINPSIQRLVIQPSNFLPNTCVTADIAHDGIKLNSSLPFNVTSGNTILYFNCTDSLLRSPLNCSSTSLCHSYINGSRGAAACEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSLGVVPWPEPGLELQWLLPREPVCNTQADCDVNAVCGVDPSGTALRRCLCNSGFVWDPVAGICSQNTCHDPDGCSTHRTALIAGIVSGVGAALIISTIAMLVYNRHRRAKEAQDRLTKEREAILNSNGGGGRAAKIFTGKEIKRATHNFSVDHLLGVGGYGEVYKGVLGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGIKDTRSLSWEERLRIAQGTAEGLAYLHFSAVPPIYHRDVKSSNILLDHKLIPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFGREADDVNLAVYVQRLVEEERLVDAIDPWLKKGATDVEVDTMKALGFLAVGCLEQRRQNRPSMKEVVEEIQYIISIAIAKA 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8049981 8053030 - ClG42_11g0081300.10 Clacu11g0813 261690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0813 625 SUPERFAMILY Protein kinase-like (PK-like) 327 613 IPR011009 -
Clacu11g0813 625 Gene3D Transferase(Phosphotransferase) domain 1 417 622 - -
Clacu11g0813 625 SMART serkin_6 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0813 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Clacu11g0813 625 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Clacu11g0813 625 CDD STKc_IRAK 347 615 - -
Clacu11g0813 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0813 625 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 29 617 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu11g0813 625 FunFam Wall-associated receptor kinase-like 20 302 416 - -
Clacu11g0813 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0813 625 FunFam Wall-associated receptor kinase-like 20 417 625 - -
Clacu11g0813 625 Pfam Protein tyrosine and serine/threonine kinase 343 613 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1705 Clacu-Chr1:29180050 Clacu11g0813 Clacu-Chr11:8049981 9.80E-78 dispersed
Clacu08g1705 Clacu-Chr8:26616606 Clacu11g0813 Clacu-Chr11:8049981 6.10E-80 dispersed
Clacu11g0813 Clacu-Chr11:8049981 Clacu11g1106 Clacu-Chr11:14104833 2.70E-76 dispersed
Clacu10g1935 Clacu-Chr10:32948844 Clacu11g0813 Clacu-Chr11:8049981 1.90E-162 transposed
Clacu11g0813 Clacu-Chr11:8049981 Clacu04g0842 Clacu-Chr4:22758112 4.20E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73962 PF00069 Pkinase 4.20E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0813 - - - 0.0