Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0821 ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACATGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTTATCACTAAACATACTCCCAATGCCTTTCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCATCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCTCCTTGACCGTGTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCTGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAGAAGAAATTAGAAGAAGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTGGCAGCAGCAGCAGCAGCAGCAGCAACAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA 747 50.07 MADRCWGGIGNLAHTEQEHGTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTTSLPVYNLIPNTQISQEMFWAPLPLPPPSY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8110685 8111431 + ClG42_11g0082100.10 Clacu11g0821 261698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0821 248 MobiDBLite consensus disorder prediction 1 53 - -
Clacu11g0821 248 MobiDBLite consensus disorder prediction 181 203 - -
Clacu11g0821 248 Coils Coil 179 199 - -
Clacu11g0821 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu11g0821 248 CDD DUF296 61 169 IPR005175 -
Clacu11g0821 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 170 IPR005175 -
Clacu11g0821 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 57 183 - -
Clacu11g0821 248 Gene3D - 61 191 - -
Clacu11g0821 248 PIRSF ESCAROLA 9 241 IPR014476 GO:0003680(InterPro)
Clacu11g0821 248 ProSiteProfiles PPC domain profile profile. 57 192 IPR005175 -
Clacu11g0821 248 MobiDBLite consensus disorder prediction 17 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1220 Clacu-Chr9:12287147 Clacu11g0821 Clacu-Chr11:8110685 8.50E-51 dispersed
Clacu10g0174 Clacu-Chr10:2032372 Clacu11g0821 Clacu-Chr11:8110685 4.80E-48 dispersed
Clacu11g0821 Clacu-Chr11:8110685 Clacu11g1638 Clacu-Chr11:27538526 3.60E-32 dispersed
Clacu11g0821 Clacu-Chr11:8110685 Clacu07g0338 Clacu-Chr7:3843198 1.40E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0821 - - - 0.0