Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0827 | ATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA | 828 | 45.05 | MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8186532 | 8189259 | + | ClG42_11g0082700.10 | Clacu11g0827 | 261704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0827 | 275 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 255 | IPR001841 | - | |
Clacu11g0827 | 275 | SUPERFAMILY | RING/U-box | 208 | 262 | - | - | |
Clacu11g0827 | 275 | CDD | RING-H2_PA-TM-RING | 213 | 255 | - | - | |
Clacu11g0827 | 275 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 260 | IPR013083 | - | |
Clacu11g0827 | 275 | MobiDBLite | consensus disorder prediction | 171 | 205 | - | - | |
Clacu11g0827 | 275 | Pfam | Ring finger domain | 213 | 255 | IPR001841 | - | |
Clacu11g0827 | 275 | SMART | ring_2 | 214 | 254 | IPR001841 | - | |
Clacu11g0827 | 275 | MobiDBLite | consensus disorder prediction | 176 | 205 | - | - | |
Clacu11g0827 | 275 | PANTHER | TARGET OF ERK KINASE MPK-1 | 2 | 258 | - | GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu07g0245 | Clacu-Chr7:2854383 | Clacu11g0827 | Clacu-Chr11:8186532 | 1.80E-10 | dispersed | |
Clacu10g1799 | Clacu-Chr10:31602422 | Clacu11g0827 | Clacu-Chr11:8186532 | 4.10E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0827 | K16283 | - | csv:101216306 | 502.286 |