Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0827 ATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA 828 45.05 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8186532 8189259 + ClG42_11g0082700.10 Clacu11g0827 261704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0827 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Clacu11g0827 275 SUPERFAMILY RING/U-box 208 262 - -
Clacu11g0827 275 CDD RING-H2_PA-TM-RING 213 255 - -
Clacu11g0827 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 260 IPR013083 -
Clacu11g0827 275 MobiDBLite consensus disorder prediction 171 205 - -
Clacu11g0827 275 Pfam Ring finger domain 213 255 IPR001841 -
Clacu11g0827 275 SMART ring_2 214 254 IPR001841 -
Clacu11g0827 275 MobiDBLite consensus disorder prediction 176 205 - -
Clacu11g0827 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0245 Clacu-Chr7:2854383 Clacu11g0827 Clacu-Chr11:8186532 1.80E-10 dispersed
Clacu10g1799 Clacu-Chr10:31602422 Clacu11g0827 Clacu-Chr11:8186532 4.10E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0827 K16283 - csv:101216306 502.286