Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g0851 | ATGATCTCACCATCCATTCTTCTTGATCCTTCGGTGTACAACACACCACGTGTTCCAAACCAATTGGATCAGCGATTTATGCTCATCCCTGGCTCACGGATCCAACTAGCCAGGAGAAGCTTTGCACTTTCTTCCAAATCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTACACTGCACCAATGGAGGAAAATTCAAGCCTTGTCACAGAATCAACTCTCACAAACTCCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGCAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCATGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACATTGGCGTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTTTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTACCTCAATGGAATAGACACTCCTAATATGTTTGGTGCCACAACATTGATCGTTAAGATTATTGGGAGCATTGGAGCAGTGGCTGCTGGGCTAGATCTTGGGAAAGAGGGGCCTCTAGTACACATTGGCAGCTGCATTGCTTCTTTACTTGGACAGGGCGGTCCAGATAATTACCGAGTCAAATGGACATGGCTGCGCTATTTCAACAACGATCGTGATCGTCGGGATCTTATCACATGTGGGGCATCATCAGGCGTTTGTGCAGCTTTCCGAGCTCCAGTCGGGGGTGTCCTATTTGCTCTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCCTGCTGTGGAGGACCTTCTTCAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATCATGTTTGATGTCAGTGGTGTTTCTGTTAGTTACCATATCATGGACATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTCTCCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAAGGAAGAATGCACAAACTAATACTGAGCTTAGGAGTATCACTCTTCACTTCAATCTGCCAATACAGTCTGCCATACCTTGTCCAATGCACCCCCTGCAACCCTTCTCTTCCAGCTTCCGCTTGCCCTACCAATGGCCGCTCCGGCAATTTCAAGCAGTTCAACTGTCCTAAAGGCCATTACAACGACCTCGCTACTCTTCTTCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAATACTTCCGCCGAGTATCAGCCTCTCTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTGTTAGGGTTAATCACCTTCGGTATCGCCGTCCCCTCCGGTCTCTTCCTTCCAATCATCTTAATGGGCTCTGGCTATGGCCGCCTCATCGGCCTCCTCATGCGACCTTACACCAATCTCGATCAAGGACTCTTGGCTGTTCTTGGTGCTGCCTCCTTAATGGCCGGCTCCATGCGGATGACCGTTTCCCTCTGTGTCATATTCCTCGAACTCACCAACAATCTCCTTCTACTTCCGATTACCATGATTGTTCTTCTGATTGCGAAAACCGTCGGGGACAGTTTTAACCCTAGCATTTACGACATCATTCTGCATCTGAAGGGGCTTCCATTCCTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTGGGCGAGCTGGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGATTAGAGAAAGTATCCCGCATTGTGGAGGTTCTTAGGAACACGACGCACAATGGATTCCCTGTTGTGGACGCCGATGCGGTGGTGCCGCCAGTGGGAATGGCGGTAGGAGCGACGGAGCTACACGGACTGGTGCTGAGAGCGCATCTGCTACAGGTGCTGAAGAAGAAATGGTTCTTGAGAGAGCGGAGGAGAACGGAGGACTGGGAGGTGAGGGAGAAATTTACATGGGTGGAATTAGCGGAGAGGGAAGGGAAGATCGAGGAGCTTGTAGTTACAAAAGAGGAGATGGAAATGTACGTTGATCTTCATCCTCTTACCAACACTACGCCTTATACAGTAATGGAAAGCATGTCCGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTAGGGCTCCGCCATTTGTTGATTGTGCCCAAATATGAAGCAGCTGGCGTTCCGCCGGTAATTGGGATTTTGACGAGGCAGGACCTGAGGCCATACAATATTCTGAGTGCATTTCCTCATCTGGAAAGAATCAAAGGCAACGAAAAACGGAATTGA | 2559 | 48.65 | MISPSILLDPSVYNTPRVPNQLDQRFMLIPGSRIQLARRSFALSSKSQNLTIFSSLCVHYTAPMEENSSLVTESTLTNSMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGRMHKLILSLGVSLFTSICQYSLPYLVQCTPCNPSLPASACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTSAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLRNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEDWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLERIKGNEKRN | 852 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8607939 | 8612458 | - | ClG42_11g0085100.10 | Clacu11g0851 | 261728 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g0851 | 852 | MobiDBLite | consensus disorder prediction | 69 | 99 | - | - | |
| Clacu11g0851 | 852 | SUPERFAMILY | CBS-domain pair | 649 | 831 | IPR046342 | - | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 576 | 592 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 318 | 337 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 594 | 613 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 254 | 273 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 632 | 646 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 223 | 240 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Chloride channel signature | 544 | 564 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 665 | 833 | - | - | |
| Clacu11g0851 | 852 | Pfam | CBS domain | 780 | 831 | IPR000644 | - | |
| Clacu11g0851 | 852 | PRINTS | Plant CLC chloride channel signature | 128 | 136 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Plant CLC chloride channel signature | 353 | 363 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Plant CLC chloride channel signature | 496 | 512 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Plant CLC chloride channel signature | 371 | 378 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0851 | 852 | PRINTS | Plant CLC chloride channel signature | 339 | 347 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Clacu11g0851 | 852 | Pfam | Voltage gated chloride channel | 211 | 625 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu11g0851 | 852 | SUPERFAMILY | Clc chloride channel | 132 | 647 | IPR014743 | - | |
| Clacu11g0851 | 852 | Gene3D | Clc chloride channel | 145 | 647 | - | - | |
| Clacu11g0851 | 852 | SMART | cbs_1 | 667 | 727 | IPR000644 | - | |
| Clacu11g0851 | 852 | SMART | cbs_1 | 782 | 835 | IPR000644 | - | |
| Clacu11g0851 | 852 | FunFam | Chloride channel ClC3 | 146 | 463 | - | - | |
| Clacu11g0851 | 852 | ProSiteProfiles | CBS domain profile. | 779 | 843 | IPR000644 | - | |
| Clacu11g0851 | 852 | CDD | ClC_6_like | 123 | 645 | - | - | |
| Clacu11g0851 | 852 | Gene3D | - | 664 | 832 | IPR046342 | - | |
| Clacu11g0851 | 852 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 98 | 832 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu11g0466 | Clacu-Chr11:4456807 | Clacu11g0851 | Clacu-Chr11:8607939 | 2.50E-217 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g0851 | K05016 | - | csv:101210008 | 1482.62 |