Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0921 ATGGCCATGCGAGTGGTGCTGTCATTGACTCTTCTCTTCATTCTCATTGGGGTCGCCCAGGCCCAGCTCTCCCTCAACTTCTACAATTCAACGTGCCCAAATGTCGAACAAATCGTTCGCCAGGCCGTCACCCTAAAGTTTAATCAAACATTCGTTACTGTTCCCGCAACTCTAAGGCTCTTCTTCCATGACTGCTTTGTTCAGGGATGTGATGCTTCGGTTATGATAGCATCCGCAAGTGGTGATGCAGAAAAAGACGCCGAGGACAACTTGTCATTGGCAGGAGATGGATTTGATACCGTGGTTAAAGCTAAACAAGCAGTGGAAGCTCAATGTCCTGGAATAGTATCCTGTGCGGATGTATTAGCCATCGCAGCAAGGGACGTCGTGGTTTTGGCAAGAGGGCCAAATTTCGCTGTTGAATTAGGACGGCGAGATGGGCTAATCTCGAAAGCATCTTTAGTAGCCGGAAACTTACCGGGACCAAACTTCAACTTGAGCGAATTAAACGCAATGTTCGCCAAAAACAACCTAACCCAAACCGAAATGATTGCGTTATCAGGAGCTCACACGGTTGGGTTCTCACATTGCAACCGTTTTGCAAACCGTCTCTACAACTTCTCGGCCACTTCTAATGTGGACCCTTCTCTGGACTCGGACTACGCCCAGCAGCTCATAGACGCCTGCCCACAAAACGTGGATCCCAGAGTGGCTGTGGACATGGACACTATTACCCCAAGGAAAATGGATAATGTGTATTACCAAAATCTTGTGAACCACAAGGGGCTATTCACGTCGGATCAGGTGCTTTTTACGGACCCGTTGTCGCAACCGACGGTGAGTGGCTTTGCTAATGACAATCATGGGTTCAAGAAAGCGTTTGCGGCGGCTATGGTTCAGCTTGGGAGAGTGGGGGTTAAGACTGGGGTTTTGGGTGAGATTAGAACTGATTGTACTGCATTTAATTCCTAA 972 48.35 MAMRVVLSLTLLFILIGVAQAQLSLNFYNSTCPNVEQIVRQAVTLKFNQTFVTVPATLRLFFHDCFVQGCDASVMIASASGDAEKDAEDNLSLAGDGFDTVVKAKQAVEAQCPGIVSCADVLAIAARDVVVLARGPNFAVELGRRDGLISKASLVAGNLPGPNFNLSELNAMFAKNNLTQTEMIALSGAHTVGFSHCNRFANRLYNFSATSNVDPSLDSDYAQQLIDACPQNVDPRVAVDMDTITPRKMDNVYYQNLVNHKGLFTSDQVLFTDPLSQPTVSGFANDNHGFKKAFAAAMVQLGRVGVKTGVLGEIRTDCTAFNS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8872742 8874345 + ClG42_11g0092100.10 Clacu11g0921 261798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0921 323 FunFam Peroxidase 160 301 - -
Clacu11g0921 323 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Clacu11g0921 323 PANTHER - 9 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Clacu11g0921 323 SUPERFAMILY Heme-dependent peroxidases 22 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 Pfam Peroxidase 39 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 Gene3D - 26 322 - -
Clacu11g0921 323 Gene3D Peroxidase, domain 2 160 301 - -
Clacu11g0921 323 ProSiteProfiles Plant heme peroxidase family profile. 22 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 FunFam Peroxidase 26 168 - -
Clacu11g0921 323 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0921 323 CDD secretory_peroxidase 22 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0911 Clacu-Chr5:8078153 Clacu11g0921 Clacu-Chr11:8872742 9.80E-68 dispersed
Clacu11g0921 Clacu-Chr11:8872742 Clacu11g0924 Clacu-Chr11:8916384 1.70E-122 dispersed
Clacu11g0921 Clacu-Chr11:8872742 Clacu11g0922 Clacu-Chr11:8884020 1.40E-116 tandem
Clacu01g1812 Clacu-Chr1:30285897 Clacu11g0921 Clacu-Chr11:8872742 7.20E-113 transposed
Clacu02g1253 Clacu-Chr2:25152953 Clacu11g0921 Clacu-Chr11:8872742 4.20E-116 transposed
Clacu03g0787 Clacu-Chr3:8842214 Clacu11g0921 Clacu-Chr11:8872742 5.70E-76 transposed
Clacu05g1913 Clacu-Chr5:28339352 Clacu11g0921 Clacu-Chr11:8872742 1.70E-103 transposed
Clacu01g1246 Clacu-Chr1:20864889 Clacu11g0921 Clacu-Chr11:8872742 2.90E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0921 K00430 - csv:101213098 556.984