Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0922 ATGGGGATTTTTGTGAGAAAAGGAGATGGGCAGCTGGTGGAAATTTTTTATAAATCCACTTGTCCAAACGTGGAACAAATAGTGAGACAGGCCGTTCAAAACAAGCTCTCCCAAACTACTATTACCATTCCCGCTACTCTCCGTCTCTTCTTCCATGATTGTTTCGTTGAGGGATGCGATGCTTCGATCATGATTTCATCGCCAAACGGAGACGCCGAGAAGGACGCTCAAGATAACCTTTCCCTTGCTGGAGATGGCTTTGACACCGTCGTCAAGGCAAAACAGGCCGTTGAAGCCGCCTGCCCCGGTCGAGTCTCTTGCGCTGACATTTTGGCTCTCGCTGCCCGAGATGCCGTCGTCCTCGCAGGAGGCCCAAATTTCAACGTCGAATTAGGACGTCGTGATGGCCTGATCTCCAAAGCCTCACGTGTCGACGGAAATTTACCATCCCCAAATTTCGACCTCAACACACTGACTTCCATGTTCGCCAGACATGGCCTCTCCCAAACCGACATGATCGCCCTCTCCGGCGCCCACACAATCGGCGCCTCCCACTGCAACCGCTTTTCCGATCGACTCTTCTCTGCTTCCGGTGTAGATCCATCGCTAAATCCTACCTACGCAGAGCAGTTGAAACAAGCGTGCCCTCGAAATGTGGATCCAAATGTGGTGGTGAAGCTGGATCCGACCACTCCAGACACTTTTGACAACGTGTATTACCGAAATCTAATGAACGGAAAAGGACTGTTTAGATCAGATGAGGTTCTGTTCACGAGCTCAGCGTCGAAGGGGACGGTGGTGGGATTTGCGAACAACGGAGGGCAGTTCAATACGGCGTTTGTAGAGGCGATGAGGAAGCTTGGGAGAGTGGGAGTTAAGACGGGGAGAGCTGGAGAGATAAGGAGAGACTGTAGTGCCTTCAATTGA 927 51.46 MGIFVRKGDGQLVEIFYKSTCPNVEQIVRQAVQNKLSQTTITIPATLRLFFHDCFVEGCDASIMISSPNGDAEKDAQDNLSLAGDGFDTVVKAKQAVEAACPGRVSCADILALAARDAVVLAGGPNFNVELGRRDGLISKASRVDGNLPSPNFDLNTLTSMFARHGLSQTDMIALSGAHTIGASHCNRFSDRLFSASGVDPSLNPTYAEQLKQACPRNVDPNVVVKLDPTTPDTFDNVYYRNLMNGKGLFRSDEVLFTSSASKGTVVGFANNGGQFNTAFVEAMRKLGRVGVKTGRAGEIRRDCSAFN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8884020 8887761 + ClG42_11g0092200.10 Clacu11g0922 261799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0922 308 CDD secretory_peroxidase 11 307 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu11g0922 308 PRINTS Haem peroxidase superfamily signature 105 122 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Haem peroxidase superfamily signature 171 186 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Haem peroxidase superfamily signature 43 57 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Haem peroxidase superfamily signature 123 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Haem peroxidase superfamily signature 228 243 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 Gene3D Peroxidase, domain 2 149 287 - -
Clacu11g0922 308 ProSiteProfiles Plant heme peroxidase family profile. 11 308 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 SUPERFAMILY Heme-dependent peroxidases 16 308 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 ProSitePatterns Peroxidases proximal heme-ligand signature. 171 181 IPR019793 -
Clacu11g0922 308 PANTHER - 8 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 Pfam Peroxidase 28 272 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 FunFam Peroxidase 149 287 - -
Clacu11g0922 308 FunFam Peroxidase 15 158 - -
Clacu11g0922 308 Gene3D - 16 308 - -
Clacu11g0922 308 PRINTS Plant peroxidase signature 85 98 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 21 40 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 242 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 282 295 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 104 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 170 182 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 45 65 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 226 241 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0922 308 PRINTS Plant peroxidase signature 123 138 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1760 Clacu-Chr5:26748561 Clacu11g0922 Clacu-Chr11:8884020 1.10E-63 dispersed
Clacu09g1599 Clacu-Chr9:27754653 Clacu11g0922 Clacu-Chr11:8884020 2.60E-62 dispersed
Clacu09g1600 Clacu-Chr9:27787526 Clacu11g0922 Clacu-Chr11:8884020 2.10E-59 dispersed
Clacu11g0725 Clacu-Chr11:7114727 Clacu11g0922 Clacu-Chr11:8884020 1.20E-57 dispersed
Clacu11g0922 Clacu-Chr11:8884020 Clacu01g1734 Clacu-Chr1:29503881 7.10E-54 dispersed
Clacu11g0922 Clacu-Chr11:8884020 Clacu11g0924 Clacu-Chr11:8916384 4.20E-123 proximal
Clacu11g0921 Clacu-Chr11:8872742 Clacu11g0922 Clacu-Chr11:8884020 1.40E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0922 K00430 - csv:101213343 545.814