Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0932 ATGGATCATCAGTTCCAAGAAGAAAGTAGTGTGAAAAAAACAAGTAGTGGATCTATGAAATCGGAGAAGAAGATAAGAAAAGGGAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACGACAAGTTTCCCAGGAGCTACTATAAGTGTTCACATCAAGGATGTAAAGTGAAGAAGCAAATTCAACGGCTTACAAATGATGAAGGAGTGGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATCGAAACCCCTCAAGATAACTTTCAACATATCTTGACTCACATGCAAATTTACCCTTCTTCCTTTTAA 366 39.34 MDHQFQEESSVKKTSSGSMKSEKKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNDKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIETPQDNFQHILTHMQIYPSSF 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9006056 9007143 - ClG42_11g0093200.10 Clacu11g0932 261809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0932 121 SUPERFAMILY WRKY DNA-binding domain 34 100 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0932 121 ProSiteProfiles WRKY domain profile. 36 101 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0932 121 SMART WRKY_cls 41 100 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0932 121 Pfam WRKY DNA -binding domain 42 99 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0932 121 Gene3D WRKY domain 25 101 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu11g0932 121 FunFam WRKY transcription factor 57 27 101 - -
Clacu11g0932 121 MobiDBLite consensus disorder prediction 1 25 - -
Clacu11g0932 121 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 104 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1556 Clacu-Chr7:30210380 Clacu11g0932 Clacu-Chr11:9006056 2.50E-44 dispersed
Clacu11g0604 Clacu-Chr11:5823888 Clacu11g0932 Clacu-Chr11:9006056 3.70E-23 dispersed
Clacu11g0932 Clacu-Chr11:9006056 Clacu07g0779 Clacu-Chr7:19700126 3.20E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48638 PF03106 WRKY 2.40E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0932 - - - 0.0