Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0957 | ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCTGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAACAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCCCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGCCCCTCGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTAGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCCTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGGGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTCGACCCCCAACGAACAGACGATACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG | 1962 | 51.17 | MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSPHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT | 653 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10166870 | 10171034 | + | ClG42_11g0095700.10 | Clacu11g0957 | 261834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0957 | 653 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 262 | 328 | - | - | |
Clacu11g0957 | 653 | PRINTS | Ethylene responsive element binding protein signature | 264 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | PRINTS | Ethylene responsive element binding protein signature | 402 | 422 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | SUPERFAMILY | DNA-binding domain | 361 | 422 | IPR016177 | GO:0003677(InterPro) | |
Clacu11g0957 | 653 | MobiDBLite | consensus disorder prediction | 165 | 253 | - | - | |
Clacu11g0957 | 653 | FunFam | AP2-like ethylene-responsive transcription factor | 361 | 422 | - | - | |
Clacu11g0957 | 653 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 205 | 455 | - | - | |
Clacu11g0957 | 653 | CDD | AP2 | 262 | 328 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | MobiDBLite | consensus disorder prediction | 10 | 29 | - | - | |
Clacu11g0957 | 653 | Gene3D | AP2/ERF domain | 362 | 422 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | Gene3D | AP2/ERF domain | 263 | 328 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | Pfam | AP2 domain | 363 | 412 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | SUPERFAMILY | DNA-binding domain | 262 | 328 | IPR016177 | GO:0003677(InterPro) | |
Clacu11g0957 | 653 | CDD | AP2 | 361 | 422 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | ProSiteProfiles | AP2/ERF domain profile. | 263 | 326 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | MobiDBLite | consensus disorder prediction | 130 | 151 | - | - | |
Clacu11g0957 | 653 | SMART | rav1_2 | 263 | 332 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | SMART | rav1_2 | 362 | 426 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | ProSiteProfiles | AP2/ERF domain profile. | 362 | 420 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g0957 | 653 | MobiDBLite | consensus disorder prediction | 186 | 236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2381 | Clacu-Chr2:36835893 | Clacu11g0957 | Clacu-Chr11:10166870 | 3.50E-105 | dispersed | |
Clacu06g1443 | Clacu-Chr6:25303807 | Clacu11g0957 | Clacu-Chr11:10166870 | 3.30E-98 | dispersed | |
Clacu07g1407 | Clacu-Chr7:28901855 | Clacu11g0957 | Clacu-Chr11:10166870 | 7.30E-94 | dispersed | |
Clacu10g0767 | Clacu-Chr10:11434103 | Clacu11g0957 | Clacu-Chr11:10166870 | 2.60E-101 | dispersed | |
Clacu10g1480 | Clacu-Chr10:27915146 | Clacu11g0957 | Clacu-Chr11:10166870 | 1.50E-64 | dispersed | |
Clacu10g1562 | Clacu-Chr10:28891926 | Clacu11g0957 | Clacu-Chr11:10166870 | 3.30E-37 | dispersed | |
Clacu10g2032 | Clacu-Chr10:33797590 | Clacu11g0957 | Clacu-Chr11:10166870 | 1.60E-39 | dispersed | |
Clacu11g0957 | Clacu-Chr11:10166870 | Clacu05g1156 | Clacu-Chr5:10637302 | 3.70E-07 | dispersed | |
Clacu11g0957 | Clacu-Chr11:10166870 | Clacu08g1833 | Clacu-Chr8:27592094 | 1.30E-92 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48640 | PF00847 | AP2 | 3.40E-09 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0957 | K09285 | - | csv:101219473 | 1049.65 |