Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0957 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCTGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAACAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCCCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGCCCCTCGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTAGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCCTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGGGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTCGACCCCCAACGAACAGACGATACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1962 51.17 MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSPHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10166870 10171034 + ClG42_11g0095700.10 Clacu11g0957 261834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0957 653 FunFam AP2-like ethylene-responsive transcription factor ANT 262 328 - -
Clacu11g0957 653 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677(InterPro)
Clacu11g0957 653 MobiDBLite consensus disorder prediction 165 253 - -
Clacu11g0957 653 FunFam AP2-like ethylene-responsive transcription factor 361 422 - -
Clacu11g0957 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 455 - -
Clacu11g0957 653 CDD AP2 262 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 MobiDBLite consensus disorder prediction 10 29 - -
Clacu11g0957 653 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 Gene3D AP2/ERF domain 263 328 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 Pfam AP2 domain 363 412 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 SUPERFAMILY DNA-binding domain 262 328 IPR016177 GO:0003677(InterPro)
Clacu11g0957 653 CDD AP2 361 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 ProSiteProfiles AP2/ERF domain profile. 263 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 MobiDBLite consensus disorder prediction 130 151 - -
Clacu11g0957 653 SMART rav1_2 263 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 SMART rav1_2 362 426 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g0957 653 MobiDBLite consensus disorder prediction 186 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2381 Clacu-Chr2:36835893 Clacu11g0957 Clacu-Chr11:10166870 3.50E-105 dispersed
Clacu06g1443 Clacu-Chr6:25303807 Clacu11g0957 Clacu-Chr11:10166870 3.30E-98 dispersed
Clacu07g1407 Clacu-Chr7:28901855 Clacu11g0957 Clacu-Chr11:10166870 7.30E-94 dispersed
Clacu10g0767 Clacu-Chr10:11434103 Clacu11g0957 Clacu-Chr11:10166870 2.60E-101 dispersed
Clacu10g1480 Clacu-Chr10:27915146 Clacu11g0957 Clacu-Chr11:10166870 1.50E-64 dispersed
Clacu10g1562 Clacu-Chr10:28891926 Clacu11g0957 Clacu-Chr11:10166870 3.30E-37 dispersed
Clacu10g2032 Clacu-Chr10:33797590 Clacu11g0957 Clacu-Chr11:10166870 1.60E-39 dispersed
Clacu11g0957 Clacu-Chr11:10166870 Clacu05g1156 Clacu-Chr5:10637302 3.70E-07 dispersed
Clacu11g0957 Clacu-Chr11:10166870 Clacu08g1833 Clacu-Chr8:27592094 1.30E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48640 PF00847 AP2 3.40E-09 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0957 K09285 - csv:101219473 1049.65